[Numpy-discussion] Problems installing on OS X

Sam Watson sswatson@olemiss....
Sat Jan 19 14:19:05 CST 2008


Dear all,

I am running OS X 10.4.11, and when I run gcc -v, I get:

Using built-in specs.
Target: powerpc-apple-darwin8
Configured with: /private/var/tmp/gcc/gcc-5026.obj~19/src/configure -- 
disable-checking --prefix=/usr --mandir=/share/man --enable- 
languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^+.-]*$/ 
s/$/-4.0/ --with-gxx-include-dir=/include/gcc/darwin/4.0/c++ -- 
build=powerpc-apple-darwin8 --host=powerpc-apple-darwin8 -- 
target=powerpc-apple-darwin8
Thread model: posix
gcc version 4.0.0 (Apple Computer, Inc. build 5026)

However, when I move into the numpy-1.0.4 directory and run python  
setup.py install, I get hundreds of error messages which appear to  
relate to my C compiler.  Here is the output with lots of similar C  
messages in the middle omitted:

non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2_4422
blas_opt_info:
   FOUND:
     extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
     define_macros = [('NO_ATLAS_INFO', 3)]
     extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/ 
vecLib.framework/Headers']

lapack_opt_info:
   FOUND:
     extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
     define_macros = [('NO_ATLAS_INFO', 3)]
     extra_compile_args = ['-faltivec']

running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands -- 
compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands -- 
fcompiler options
running build_src
building py_modules sources
building extension "numpy.core.multiarray" sources
Generating build/src.macosx-10.3-fat-2.5/numpy/core/config.h
customize NAGFCompiler
Could not locate executable f95
customize AbsoftFCompiler
Could not locate executable f90
Found executable /sw/bin/f77
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
customize IBMFCompiler
Could not locate executable xlf90
Could not locate executable xlf
customize IntelFCompiler
Could not locate executable ifort
Could not locate executable ifc
customize GnuFCompiler
Found executable /sw/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
C compiler: gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/ 
MacOSX10.4u.sdk -fno-strict-aliasing -Wno-long-double -no-cpp-precomp  
-mno-fused-madd -fno-common -dynamic -DNDEBUG -g -O3

compile options: '-I/Library/Frameworks/Python.framework/Versions/2.5/ 
include/python2.5 -Inumpy/core/src -Inumpy/core/include -I/Library/ 
Frameworks/Python.framework/Versions/2.5/include/python2.5 -c'
gcc: _configtest.c
In file included from _configtest.c:2:
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:18:20: error: limits.h: No such file or directory
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:21:2: error: #error "Something's broken.  UCHAR_MAX should  
be defined in limits.h."
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:25:2: error: #error "Python's source code assumes C's  
unsigned char is an 8-bit type."
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:32:19: error: stdio.h: No such file or directory
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:34:5: error: #error "Python.h requires that stdio.h define  
NULL."
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:37:20: error: string.h: No such file or directory
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:39:19: error: errno.h: No such file or directory
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:41:20: error: stdlib.h: No such file or directory
...

/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
pystrtod.h:11: error: parse error before 'size_t'
In file included from _configtest.c:2:
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:134: error: parse error before '*' token
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:134: error: parse error before '*' token
/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5/ 
Python.h:134: warning: data definition has no type or storage class
_configtest.c: In function 'main':
_configtest.c:9: error: 'FILE' undeclared (first use in this function)
_configtest.c:9: error: (Each undeclared identifier is reported only  
once
_configtest.c:9: error: for each function it appears in.)
_configtest.c:9: error: 'fp' undeclared (first use in this function)
_configtest.c:17: warning: incompatible implicit declaration of built- 
in function 'fprintf'
lipo: can't figure out the architecture type of: /var/tmp//ccPjVTJJ.out
failure.
removing: _configtest.c _configtest.o




I know that my C compiler works, because I do my research in C on a  
regular basis.  Does anybody have any ideas?

Thanks,
Sam Watson


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