[Numpy-discussion] building 1.1.0 on 64bit, seems to be stuck on infinite loop or something

Charles Doutriaux doutriaux1@llnl....
Tue Jun 17 16:44:48 CDT 2008


Just so it might help debuging, when i kill it i get:
_exec_command_posix failed (status=2)
C.


Charles Doutriaux wrote:
> Hello,
>
> I'm trying to build 1.1.0 on a:
> Linux thunder0 2.6.9-74chaos #1 SMP Wed Oct 24 08:41:12 PDT 2007 ia64 
> ia64 ia64 GNU/Linux
>
> using python 2.5 (latest stable)
>
> It seems to be stuck forever at the end of that output:
>
> anybody ran into this?
>
> ~/CDAT/5.0.0.beta1/bin/python setup.py install
> Running from numpy source directory.
> F2PY Version 2_5237
> blas_opt_info:
> blas_mkl_info:
>   libraries mkl,vml,guide not found in /g/g90/cdoutrix/CDAT/Externals/lib
>   NOT AVAILABLE
>
> atlas_blas_threads_info:
> Setting PTATLAS=ATLAS
>   libraries ptf77blas,ptcblas,atlas not found in 
> /g/g90/cdoutrix/CDAT/Externals/lib
>   NOT AVAILABLE
>
> atlas_blas_info:
>   libraries f77blas,cblas,atlas not found in 
> /g/g90/cdoutrix/CDAT/Externals/lib
>   NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1340: 
> UserWarning:
>     Atlas (http://math-atlas.sourceforge.net/) libraries not found.
>     Directories to search for the libraries can be specified in the
>     numpy/distutils/site.cfg file (section [atlas]) or by setting
>     the ATLAS environment variable.
>   warnings.warn(AtlasNotFoundError.__doc__)
> blas_info:
>   libraries blas not found in /g/g90/cdoutrix/CDAT/Externals/lib
>   NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1349: 
> UserWarning:
>     Blas (http://www.netlib.org/blas/) libraries not found.
>     Directories to search for the libraries can be specified in the
>     numpy/distutils/site.cfg file (section [blas]) or by setting
>     the BLAS environment variable.
>   warnings.warn(BlasNotFoundError.__doc__)
> blas_src_info:
>   NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1352: 
> UserWarning:
>     Blas (http://www.netlib.org/blas/) sources not found.
>     Directories to search for the sources can be specified in the
>     numpy/distutils/site.cfg file (section [blas_src]) or by setting
>     the BLAS_SRC environment variable.
>   warnings.warn(BlasSrcNotFoundError.__doc__)
>   NOT AVAILABLE
>
> lapack_opt_info:
> lapack_mkl_info:
> mkl_info:
>   libraries mkl,vml,guide not found in /g/g90/cdoutrix/CDAT/Externals/lib
>   NOT AVAILABLE
>
>   NOT AVAILABLE
>
> atlas_threads_info:
> Setting PTATLAS=ATLAS
>   libraries ptf77blas,ptcblas,atlas not found in 
> /g/g90/cdoutrix/CDAT/Externals/lib
>   libraries lapack_atlas not found in /g/g90/cdoutrix/CDAT/Externals/lib
> numpy.distutils.system_info.atlas_threads_info
>   NOT AVAILABLE
>
> atlas_info:
>   libraries f77blas,cblas,atlas not found in 
> /g/g90/cdoutrix/CDAT/Externals/lib
>   libraries lapack_atlas not found in /g/g90/cdoutrix/CDAT/Externals/lib
> numpy.distutils.system_info.atlas_info
>   NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1247: 
> UserWarning:
>     Atlas (http://math-atlas.sourceforge.net/) libraries not found.
>     Directories to search for the libraries can be specified in the
>     numpy/distutils/site.cfg file (section [atlas]) or by setting
>     the ATLAS environment variable.
>   warnings.warn(AtlasNotFoundError.__doc__)
> lapack_info:
>   libraries lapack not found in /g/g90/cdoutrix/CDAT/Externals/lib
>   NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1258: 
> UserWarning:
>     Lapack (http://www.netlib.org/lapack/) libraries not found.
>     Directories to search for the libraries can be specified in the
>     numpy/distutils/site.cfg file (section [lapack]) or by setting
>     the LAPACK environment variable.
>   warnings.warn(LapackNotFoundError.__doc__)
> lapack_src_info:
>   NOT AVAILABLE
>
> /g/g90/cdoutrix/svn/cdat/branches/devel/build/numpy-1.1.0/numpy/distutils/system_info.py:1261: 
> UserWarning:
>     Lapack (http://www.netlib.org/lapack/) sources not found.
>     Directories to search for the sources can be specified in the
>     numpy/distutils/site.cfg file (section [lapack_src]) or by setting
>     the LAPACK_SRC environment variable.
>   warnings.warn(LapackSrcNotFoundError.__doc__)
>   NOT AVAILABLE
>
> running install
> running build
> running scons
> customize UnixCCompiler
> Found executable /usr/local/bin/gcc
> customize GnuFCompiler
> Found executable /usr/local/bin/g77
> gnu: no Fortran 90 compiler found
> gnu: no Fortran 90 compiler found
> customize GnuFCompiler
> gnu: no Fortran 90 compiler found
> gnu: no Fortran 90 compiler found
> customize UnixCCompiler
> customize UnixCCompiler using scons
> running config_cc
> unifing config_cc, config, build_clib, build_ext, build commands 
> --compiler options
> running config_fc
> unifing config_fc, config, build_clib, build_ext, build commands 
> --fcompiler options
> running build_src
> building py_modules sources
> building extension "numpy.core.multiarray" sources
>   adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
>   adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
> executing numpy/core/code_generators/generate_array_api.py
>   adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to 
> sources.
>   adding 'build/src.linux-ia64-2.5/numpy/core/src' to include_dirs.
> numpy.core - nothing done with h_files = 
> ['build/src.linux-ia64-2.5/numpy/core/src/scalartypes.inc', 
> 'build/src.linux-ia64-2.5/numpy/core/src/arraytypes.inc', 
> 'build/src.linux-ia64-2.5/numpy/core/config.h', 
> 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h', 
> 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h']
> building extension "numpy.core.umath" sources
>   adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
>   adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
> executing numpy/core/code_generators/generate_ufunc_api.py
>   adding 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h' to sources.
>   adding 'build/src.linux-ia64-2.5/numpy/core/src' to include_dirs.
> numpy.core - nothing done with h_files = 
> ['build/src.linux-ia64-2.5/numpy/core/src/scalartypes.inc', 
> 'build/src.linux-ia64-2.5/numpy/core/src/arraytypes.inc', 
> 'build/src.linux-ia64-2.5/numpy/core/config.h', 
> 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h', 
> 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h']
> building extension "numpy.core._sort" sources
>   adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
>   adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
> executing numpy/core/code_generators/generate_array_api.py
>   adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to 
> sources.
> numpy.core - nothing done with h_files = 
> ['build/src.linux-ia64-2.5/numpy/core/config.h', 
> 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h','build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h']
> building extension "numpy.core.scalarmath" sources
>   adding 'build/src.linux-ia64-2.5/numpy/core/config.h' to sources.
>   adding 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h' to sources.
> executing numpy/core/code_generators/generate_array_api.py
>   adding 'build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h' to 
> sources.
> executing numpy/core/code_generators/generate_ufunc_api.py
>   adding 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h' to sources.
> numpy.core - nothing done with h_files = 
> ['build/src.linux-ia64-2.5/numpy/core/config.h', 
> 'build/src.linux-ia64-2.5/numpy/core/numpyconfig.h','build/src.linux-ia64-2.5/numpy/core/__multiarray_api.h', 
> 'build/src.linux-ia64-2.5/numpy/core/__ufunc_api.h']
> building extension "numpy.core._dotblas" sources
> building extension "numpy.lib._compiled_base" sources
> building extension "numpy.numarray._capi" sources
> building extension "numpy.fft.fftpack_lite" sources
> building extension "numpy.linalg.lapack_lite" sources
> ### Warning:  Using unoptimized lapack ###
>   adding 'numpy/linalg/lapack_litemodule.c' to sources.
>   adding 'numpy/linalg/python_xerbla.c' to sources.
>   adding 'numpy/linalg/zlapack_lite.c' to sources.
>   adding 'numpy/linalg/dlapack_lite.c' to sources.
>   adding 'numpy/linalg/blas_lite.c' to sources.
>   adding 'numpy/linalg/dlamch.c' to sources.
>   adding 'numpy/linalg/f2c_lite.c' to sources.
> building extension "numpy.random.mtrand" sources
> customize GnuFCompiler
> gnu: no Fortran 90 compiler found
> gnu: no Fortran 90 compiler found
> customize GnuFCompiler
> gnu: no Fortran 90 compiler found
> gnu: no Fortran 90 compiler found
> customize GnuFCompiler using config
> C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall 
> -Wstrict-prototypes -fPIC
>
> compile options: '-Inumpy/core/src -Inumpy/core/include 
> -I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 
> -I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 -c'
> gcc: _configtest.c
> gcc _configtest.o -o _configtest
> _configtest
> failure.
> removing: _configtest.c _configtest.o _configtest
> building data_files sources
> running build_py
> copying build/src.linux-ia64-2.5/numpy/__config__.py -> 
> build/lib.linux-ia64-2.5/numpy
> copying build/src.linux-ia64-2.5/numpy/distutils/__config__.py -> 
> build/lib.linux-ia64-2.5/numpy/distutils
> running build_ext
> customize UnixCCompiler
> customize UnixCCompiler using build_ext
> building 'numpy.random.mtrand' extension
> compiling C sources
> C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall 
> -Wstrict-prototypes -fPIC
>
> compile options: '-Inumpy/core/include 
> -Ibuild/src.linux-ia64-2.5/numpy/core -Inumpy/core/src 
> -Inumpy/core/include 
> -I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 
> -I/g/g90/cdoutrix/CDAT/5.0.0.beta1/include/python2.5 -c'
> gcc: numpy/random/mtrand/mtrand.c
>                                                                           
>
>
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