[Numpy-discussion] building numpy/scipy

Mike Landis mlandis001@comcast....
Fri Jan 2 21:10:07 CST 2009


Maybe the reason I'm having trouble is that I'm trying to get it 
working on Windows, when almost everyone else is running on Linux?  I 
have cygwin with f77, g++, make, ... installed, but it's definitely 
not a Linux machine.  I'm working from the windows install 
documentation page.  Maybe there are additional steps that you 
wouldn't have on Linux.  It's not clear whether BLAS and LAPACK and 
ATLAS are all distinct or if building one gets you one or more of the 
others, e.g. the ATLAS build produces both blas and lapack 
directories.  Is there a third ATLAS library?

When I set up site.cfg in site-packages/numpy and run "python 
setup.py install" from there, it complains that this isn't the right 
place to run setup.py, so I put the site.cfg in d:\temp\numpy-1.2.1\ 
and ran setup.py install there.  I now have ATLAS libraries, so my 
site.cfg looks like this:

[atlas]
library_dirs = d:\Docs\ATLAS\build\lib
atlas_libs = lapack, f77blas, cblas, atlas
-----------------------------------------------------
Some good news, some bad, details below.  Any suggestions would be 
appreciated...

Thanks, Mike

Running from numpy source directory.
blas_opt_info:
blas_mkl_info:
    libraries mkl, vml, guide not found in d:\Programs\Python25\lib
    libraries mkl, vml, guide not found in C:\
    libraries mkl, vml, guide not found in d:\Programs\Python25\libs
    NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
   FOUND:
      libraries = ['lapack', 'f77blas', ;cblas', 'atlas']
      library_dirs = ['d:\\Docs\\ATLAS\\build\\lib']
      language = c

No module named msvccompiler in numpy.disutils; trying from disutils
   FOUND:
      libraries = ['lapack', 'f77blas', ;cblas', 'atlas']
      library_dirs = ['d:\\Docs\\ATLAS\\build\\lib']
      language = c
      define_macros = [('ATLAS_INFO', '"\\"?.?.?\\""')]

lapack_opt_info:
lapack_mkl_info:
mkl_info:
    libraries mkl, vml, guide not found in d:\Programs\Python25\lib
    libraries mkl, vml, guide not found in C:\
    libraries mkl, vml, guide not found in d:\Programs\Python25\libs
    NOT AVAILABLE

    NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
   libraries lapack_atlas not found in d:\Docs\ATLAS\build\lib
numpy.disutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
d:\temp\numpy-1.2.1\numpy\disutils\system_info.py:955: UserWarning:
********************************************************************************
      Lapack library (from ATLAS) is probably incomplete:
          size of d:\Docs\ATLAS\build\lib\libapack.a is 251k (expected >4000k)

      Follow the instructions in the KNOWN PROBLEMS section of the file
      numpy/INSTALL.txt.  [  NOTE:  There is no such section in this file.  ]
********************************************************************************

   warnings.warn(message)
Setting PTATLAS=ATLAS
   FOUND:
      libraries = ['lapack', 'lapack', 'f77blas', ;cblas', 'atlas']
      library_dirs = ['d:\\Docs\\ATLAS\\build\\lib']
      language = c

No module named msvccompiler in numpy.disutils; trying from disutils
   FOUND:
      libraries = ['lapack', 'lapack', 'f77blas', ;cblas', 'atlas']
      library_dirs = ['d:\\Docs\\ATLAS\\build\\lib']
      language = c
      define_macros = [('ATLAS_INFO', '"\\"?.?.?\\""')]

could not resolve pattern in '': '*.txt'
non-existing path in '': 'COMPATIBILITY'
running install
running build
running config_cc
unifying config_cc, config, build_clib, build_ext, build commands 
--compiler options
running config_fc
unifying config_fc, config, build_clib, build_ext, build commands 
--fcompiler options
running build_src
building py_modules sources
building extension "numpy.core.multiarray" sources
   adding 'build\src.win32-2.5\numpy\core\include/numpy\config.h' to sources.
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\numpyconfig.h' to sources.
executing numpy\core\code_generators\generate_numpy_api.py
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\__multiarray_api.h' to sources.
   adding 'build\src.win32-2.5\numpy\core\src' to include_dirs.
numpy.core - nothing done with h_files = 
['build\\src.win32-2.5\\numpy\\core\\src\\scalartypes.inc', 
'build\\src.win32-2.5\\numpy\\core\\src\\arraytypes.inc', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\config.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\numpyconfig.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__multiarray_api.h']
building extension "numpy.core.umath" sources
   adding 'build\src.win32-2.5\numpy\core\include/numpy\config.h' to sources.
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\numpyconfig.h' to sources.
executing numpy\core\code_generators\generate_ufunc_api.py
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\__ufunc_api.h' to sources.
   adding 'build\src.win32-2.5\numpy\core\src' to include_dirs.
numpy.core - nothing done with h_files = 
['build\\src.win32-2.5\\numpy\\core\\src\\scalartypes.inc', 
'build\\src.win32-2.5\\numpy\\core\\src\\arraytypes.inc', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\config.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\numpyconfig.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__ufunc_api.h']
building extension "numpy.core._sort" sources
   adding 'build\src.win32-2.5\numpy\core\include/numpy\config.h' to sources.
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\numpyconfig.h' to sources.
executing numpy\core\code_generators\generate_numpy_api.py
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = 
['build\\src.win32-2.5\\numpy\\core\\include/numpy\\config.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\numpyconfig.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__multiarray_api.h']
building extension "numpy.core.scalarmath" sources
   adding 'build\src.win32-2.5\numpy\core\include/numpy\config.h' to sources.
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\numpyconfig.h' to sources.
executing numpy\core\code_generators\generate_numpy_api.py
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\__multiarray_api.h' to sources.
executing numpy\core\code_generators\generate_ufunc_api.py
   adding 
'build\src.win32-2.5\numpy\core\include/numpy\__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = 
['build\\src.win32-2.5\\numpy\\core\\include/numpy\\config.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\numpyconfig.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__multiarray_api.h', 
'build\\src.win32-2.5\\numpy\\core\\include/numpy\\__ufunc_api.h']
building extension "numpy.core._dotblas" sources
   adding 'numpy\core\blasdot\_dotblas.c' to sources.
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
### Warning:  python_xerbla.c is disabled ###
   adding 'numpy\linalg\lapack_litemodule.c' to sources.
building extension "numpy.random.mtrand" sources
Traceback (most recent call last):
   File "setup.py", line 96, in <module>
     setup_package()
   File "setup.py", line 89, in setup_package
     configuration=configuration )
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\core.py", 
line 184, in setup
   File "d:\programs\python25\lib\distutils\core.py", line 151, in setup
     dist.run_commands()
   File "d:\programs\python25\lib\distutils\dist.py", line 974, in run_commands
     self.run_command(cmd)
   File "d:\programs\python25\lib\distutils\dist.py", line 994, in run_command
     cmd_obj.run()
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\install.py", 
line 49, in run
   File "d:\programs\python25\lib\distutils\command\install.py", line 
506, in run
     self.run_command('build')
   File "d:\programs\python25\lib\distutils\cmd.py", line 333, in run_command
     self.distribution.run_command(command)
   File "d:\programs\python25\lib\distutils\dist.py", line 994, in run_command
     cmd_obj.run()
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build.py", 
line 37, in run
   File "d:\programs\python25\lib\distutils\command\build.py", line 112, in run
     self.run_command(cmd_name)
   File "d:\programs\python25\lib\distutils\cmd.py", line 333, in run_command
     self.distribution.run_command(command)
   File "d:\programs\python25\lib\distutils\dist.py", line 994, in run_command
     cmd_obj.run()
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build_src.py", 
line 130, in run
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build_src.py", 
line 147, in build_sources
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build_src.py", 
line 250, in build_extension_sources
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\build_src.py", 
line 307, in generate_sources
   File "numpy\random\setup.py", line 11, in generate_libraries
     if config_cmd.try_run(tc):
   File "d:\programs\python25\lib\distutils\command\config.py", line 
278, in try_run
     self._check_compiler()
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\command\config.py", 
line 26, in _check_compiler
   File "d:\programs\python25\lib\distutils\command\config.py", line 
107, in _check_compiler
     dry_run=self.dry_run, force=1)
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\ccompiler.py", 
line 366, in new_compiler
   File 
"D:\Programs\Python25\Lib\site-packages\numpy-1.2.1\numpy\distutils\mingw32ccompiler.py", 
line 46, in __init__
   File "d:\programs\python25\lib\distutils\cygwinccompiler.py", line 
84, in __init__
     get_versions()
   File "d:\programs\python25\lib\distutils\cygwinccompiler.py", line 
424, in get_versions
     ld_version = StrictVersion(result.group(1))
   File "d:\programs\python25\lib\distutils\version.py", line 40, in __init__
     self.parse(vstring)
   File "d:\programs\python25\lib\distutils\version.py", line 107, in parse
     raise ValueError, "invalid version number '%s'" % vstring
ValueError: invalid version number '2.18.50.20080625'



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