[Numpy-discussion] ANN: NumPy 1.5.0 beta 1

Ralf Gommers ralf.gommers@googlemail....
Tue Aug 17 06:36:59 CDT 2010


On Mon, Aug 16, 2010 at 11:51 PM, Skipper Seabold <jsseabold@gmail.com>wrote:

> On Mon, Aug 16, 2010 at 11:36 AM, Ralf Gommers
> <ralf.gommers@googlemail.com> wrote:
> >
> >
> > On Mon, Aug 16, 2010 at 4:50 PM, Sandro Tosi <morph@debian.org> wrote:
> >>
> >> Hi all,
> >> sorry for the delay
> >>
> >> On Sun, Aug 1, 2010 at 18:38, Ralf Gommers <ralf.gommers@googlemail.com
> >
> >> wrote:
> >> > I am pleased to announce the availability of the first beta of NumPy
> >> > 1.5.0.
> >> > This will be the first NumPy release to include support for Python 3,
> as
> >> > well as for Python 2.7. Please try this beta and report any problems
> on
> >> > the
> >> > NumPy mailing list.
> >> >
> >> > Binaries, sources and release notes can be found at
> >> > https://sourceforge.net/projects/numpy/files/
> >> > Please note that binaries for Python 3.1 are not yet up, they will
> >> > follow as
> >> > soon as a minor issue with building them is resolved. Building from
> >> > source
> >> > with Python 3.1 should work without problems.
> >>
> >> I gave it a run on the Debian packaging system and these are the
> results:
> >>
> >> - python 3.1 can't compile it:
> >>
> >> $ python3 setup.py build
> >> Traceback (most recent call last):
> >>  File "setup.py", line 210, in <module>
> >>    setup_package()
> >>  File "setup.py", line 174, in setup_package
> >>    import py3tool
> >> ImportError: No module named py3tool
> >>
> >> but this is already known, py3tool is missing from the tarball.
> >>
> >> - python2.6 build, installation and numpy.test() works fine
> >>
> >> - I have a problem building documentation:
> >>
> >> # build doc only for default python version
> >> (export MPLCONFIGDIR=. ; make -C doc html
> >> PYTHONPATH=../build/lib.linux-x86_64-2.6)
> >> make[1]: Entering directory `/tmp/buildd/python-numpy-1.5.0~b1/doc'
> >> mkdir -p build
> >> python \
> >>                ./sphinxext/autosummary_generate.py
> source/reference/*.rst
> >> \
> >>                -p dump.xml -o source/reference/generated
> >> ./sphinxext/autosummary_generate.py:18: DeprecationWarning: The
> >> numpydoc.autosummary extension can also be found as
> >> sphinx.ext.autosummary in Sphinx >= 0.6, and the version in Sphinx >=
> >> 0.7 is superior to the one in numpydoc. This numpydoc version of
> >> autosummary is no longer maintained.
> >>  from autosummary import import_by_name
> >> Failed to import 'numpy.__array_priority__':
> >> Failed to import 'numpy.core.defchararray.len':
> >> Failed to import 'numpy.generic.__squeeze__':
> >> touch build/generate-stamp
> >> mkdir -p build/html build/doctrees
> >> LANG=C sphinx-build -b html -d build/doctrees   source build/html
> >> Running Sphinx v0.6.6
> >>
> >> Extension error:
> >> Could not import extension numpydoc (exception: No module named
> domains.c)
> >> 1.5b1 1.5.0b1
> >
> > That's because of the version of Sphinx, domains were introduced in
> version
> > 1.0. With that you should be able to build the docs.
> >
>
> Ah, glad that the directives bug got fixed.  I get the same error as
> above with Sphinx 1.0.  Different error with Sphinx 1.0.2.
>
> In [2]: np.__version__
> Out[2]: '2.0.0.dev8645'
>
> $ make html
> mkdir -p build
> touch build/generate-stamp
> mkdir -p build/html build/doctrees
> LANG=C sphinx-build -b html -d build/doctrees   source build/html
> Running Sphinx v1.0.2
> 2.0.dev8645 2.0.0.dev8645
>
> <snip>
>
> Exception occurred:
>  File "/home/skipper/numpy/doc/sphinxext/docscrape.py", line 208, in
> parse_item_name
>    raise ValueError("%s is not a item name" % text)
> ValueError:   is not a item name
> The full traceback has been saved in /tmp/sphinx-err-eHqxHV.log, if
> you want to report the issue to the developers.
> Please also report this if it was a user error, so that a better error
> message can be provided next time.
> Either send bugs to the mailing list at
> <http://groups.google.com/group/sphinx-dev/>,
> or report them in the tracker at
> <http://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks!
> make: *** [html] Error 1
>
>
> Full output: http://pastebin.com/3yGHa1wu
> Log output: http://pastebin.com/JLbVHjLY
>
> Also upgraded to docutils 0.7 to be sure, and the error persists.  Any
> ideas?
>

I've seen such an error before, but can't remember what the issue was. For
the record, my working config is:
python 2.6
numpy 1.5.x (can't check trunk right now, I'd have to recompile MPL)
sphinx 1.0.1
docutils 0.6
numpydoc 0.3.1

This may be an actual bug in trunk which is not in 1.5.x. It gets quite far
reading sources and then chokes on a specific docstring, so I think your
toolchain is fine.

Ralf
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