[Numpy-discussion] Numpy - MKL - build error

Igor Ying igor.ying@yahoo....
Wed Sep 14 04:41:27 CDT 2011


My bad, iomp5md is in compiler/lib dir, I copied it to the mkl dir and it worked.


________________________________
From: Igor Ying <igor.ying@yahoo.com>
To: "numpy-discussion@scipy.org" <numpy-discussion@scipy.org>
Sent: Wednesday, September 14, 2011 1:07 PM
Subject: Re: Numpy - MKL - build error


Yes, they all are present in that directory.  Also, I tried with root as login.


-r-xr-xr-x 1 root root  26342559 Aug  9 22:19 libmkl_avx.so
-r--r--r-- 1 root root   1190224 Aug  9 22:26 libmkl_blacs_ilp64.a
-r--r--r-- 1 root root   1191496 Aug  9 22:25 libmkl_blacs_intelmpi_ilp64.a
-r-xr-xr-x 1 root root    497597 Aug  9 22:25 libmkl_blacs_intelmpi_ilp64.so
-r--r--r-- 1 root root    676206 Aug  9 22:21 libmkl_blacs_intelmpi_lp64.a
-r-xr-xr-x 1 root root    267010 Aug  9 22:21 libmkl_blacs_intelmpi_lp64.so
-r--r--r-- 1 root root    674926 Aug  9 22:22 libmkl_blacs_lp64.a
-r--r--r-- 1 root root   1218290 Aug 
 9 22:28 libmkl_blacs_openmpi_ilp64.a
-r--r--r-- 1 root root    703042 Aug  9 22:23 libmkl_blacs_openmpi_lp64.a
-r--r--r-- 1 root root   1191152 Aug  9 22:29 libmkl_blacs_sgimpt_ilp64.a
-r--r--r-- 1 root root    675854 Aug  9 22:23 libmkl_blacs_sgimpt_lp64.a
-r--r--r-- 1 root root    425802 Aug  9 20:44 libmkl_blas95_ilp64.a
-r--r--r-- 1 root root    421410 Aug  9 20:44 libmkl_blas95_lp64.a
-r--r--r-- 1 root root    144354 Aug  9 22:29 libmkl_cdft_core.a
-r-xr-xr-x 1 root root    115588 Aug  9 22:29 libmkl_cdft_core.so
-r--r--r-- 1 root root 231886824 Aug  9 22:07 libmkl_core.a
-r-xr-xr-x 1 root root  16730033 Aug  9 22:18 libmkl_core.so
-r-xr-xr-x 1 root root  21474555 Aug  9 22:18 libmkl_def.so
-r--r--r-- 1 root root  14974574 Aug  9 22:06
 libmkl_gf_ilp64.a
-r-xr-xr-x 1 root root   7008828 Aug  9 22:48 libmkl_gf_ilp64.so
-r--r--r-- 1 root root  15140998 Aug  9 22:06 libmkl_gf_lp64.a
-r-xr-xr-x 1 root root   7055304 Aug  9 22:48 libmkl_gf_lp64.so
-r--r--r-- 1 root root  16435120 Aug  9 22:07 libmkl_gnu_thread.a
-r-xr-xr-x 1 root root   9816940 Aug  9 22:49 libmkl_gnu_thread.so
-r--r--r-- 1 root root  14968130 Aug  9 22:06 libmkl_intel_ilp64.a
-r-xr-xr-x 1 root root   7008368 Aug  9 22:48 libmkl_intel_ilp64.so
-r--r--r-- 1 root root  15134406 Aug  9 22:06 libmkl_intel_lp64.a
-r-xr-xr-x 1 root root   7053588 Aug  9 22:48 libmkl_intel_lp64.so
-r--r--r-- 1 root root   2472940 Aug  9 22:07 libmkl_intel_sp2dp.a
-r-xr-xr-x 1 root root   1191479 Aug  9 22:20 libmkl_intel_sp2dp.so
-r--r--r-- 1 root root  27642508
 Aug  9 22:07 libmkl_intel_thread.a
-r-xr-xr-x 1 root root  17516608 Aug  9 22:49 libmkl_intel_thread.so
-r--r--r-- 1 root root   5350948 Aug  9 20:44 libmkl_lapack95_ilp64.a
-r--r--r-- 1 root root   5413476 Aug  9 20:44 libmkl_lapack95_lp64.a
-r-xr-xr-x 1 root root  29543829 Aug  9 22:19 libmkl_mc3.so
-r-xr-xr-x 1 root root  25428037 Aug  9 22:19 libmkl_mc.so
-r-xr-xr-x 1 root root  22888659 Aug  9 22:18 libmkl_p4n.so
-r--r--r-- 1 root root  19232716 Aug  9 22:07 libmkl_pgi_thread.a
-r-xr-xr-x 1 root root  12243062 Aug  9 22:49 libmkl_pgi_thread.so
-r-xr-xr-x 1 root root   4984870 Aug  9 22:49 libmkl_rt.so
-r--r--r-- 1 root root  10367758 Aug  9 22:49 libmkl_scalapack_ilp64.a
-r-xr-xr-x 1 root root   6574928 Aug  9 22:50 libmkl_scalapack_ilp64.so
-r--r--r-- 1 root root  10292432
 Aug  9 22:49 libmkl_scalapack_lp64.a
-r-xr-xr-x 1 root root   6452627 Aug  9 22:50 libmkl_scalapack_lp64.so
-r--r--r-- 1 root root   9958444 Aug  9 22:07 libmkl_sequential.a
-r-xr-xr-x 1 root root   5926347 Aug  9 22:48 libmkl_sequential.so
-r--r--r-- 1 root root      1048 Aug  9 16:50 libmkl_solver_ilp64.a
-r--r--r-- 1 root root      1048 Aug  9 16:50 libmkl_solver_ilp64_sequential.a
-r--r--r-- 1 root root      1048 Aug  9 16:50 libmkl_solver_lp64.a
-r--r--r-- 1 root root      1048 Aug  9 16:50 libmkl_solver_lp64_sequential.a
-r-xr-xr-x 1 root root   6711968 Aug  9 22:48 libmkl_vml_avx.so
-r-xr-xr-x 1 root root   2795928 Aug  9 22:47 libmkl_vml_def.so
-r-xr-xr-x 1 root root   5476786 Aug  9 22:48
 libmkl_vml_mc2.so
-r-xr-xr-x 1 root root   5778052 Aug  9 22:48 libmkl_vml_mc3.so
-r-xr-xr-x 1 root root   5382511 Aug  9 22:48 libmkl_vml_mc.so
-r-xr-xr-x 1 root root   4235841 Aug  9 22:48 libmkl_vml_p4n.so
drwxr-xr-x 3 root root      4096 Aug 18 11:43 locale

Y


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Message: 1
Date: Tue, 13 Sep 2011 09:58:27 -0400
From: Olivier Delalleau <shish@keba.be>
Subject: Re: [Numpy-discussion] Numpy -
 MKL - build error
To: Discussion of Numerical Python <numpy-discussion@scipy.org>
Message-ID:
    <CAFXk4bpDN7qcwmZe2G565gsuOntau7LMH4fGSTH_zY_R+NLbMg@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

Sorry if it sounds like a stupid question, but are the files listed in the
error message present in that directory?
If yes, maybe try running the command with sudo, just in case it would be
some weird permission issue.

-=- Olivier

2011/9/13 Igor Ying <igor.ying@yahoo.com>

> Hi,
>
>  I am very new to Numpy and  trying to build Numpy 1.6.1 with Intel MKL
> 10.3.6 and getting the following
 errors.
>
> $python setup.py config --compiler=intel build_clib --compiler=intel
> build_ext --compiler=intel install
>
> Running from numpy source directory.F2PY Version 2
> blas_opt_info:
> blas_mkl_info:
>   libraries mkl_def,mkl_intel_lp64,mkl_intel_thread,mkl_core,iomp5md not
> found in /opt/intel/composer_xe_2011_sp1/mkl/lib/intel64
>   NOT AVAILABLE
>
> I have modified the site.cfg as below.
>
> [mkl]
> library_dirs = /opt/intel/composer_xe_2011_sp1/mkl/lib/intel64
> include_dirs = /opt/intel/composer_xe_2011_sp1/mkl/include
> mkl_libs = mkl_def,mkl_intel_lp64,mkl_intel_thread,mkl_core,iomp5md
> lapack_libs = mkl_lapack_lp64
>
>
> Environment variables are also set to point to mkl libraries.
>
> source /opt/intel/composer_xe_2011_sp1/bin/compilervars.sh intel64 lp64
>
> export
 OMP_NUM_THREADS=4
> LD_LIBRARY_PATH="/opt/intel/composer_xe_2011_sp1/mkl/lib/intel64:${LD_LIBRARY_PATH}";
>
> export LD_LIBRARY_PATH
> export
> LD_RUN_PATH=/opt/lib:/opt1/composer_xe_2011_sp1/lib/intel64:/opt/composer_xe_2011_sp1/mkl/lib/intel64
>
> Can anyone help me?
>
>
> _______________________________________________
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> NumPy-Discussion@scipy.org
> http://mail.scipy.org/mailman/listinfo/numpy-discussion
>
>
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