[Numpy-discussion] Comparing NumPy/IDL Performance

Olivier Delalleau shish@keba...
Mon Sep 26 10:52:11 CDT 2011


One minor thing is you should use xrange rather than range. Although it will
probably only make a difference for the empty loop ;)

Otherwise, from what I can see, tests where numpy is really much worse are:
- 1, 2, 3, 15, 18: Not numpy but Python related: for loops are not efficient
- 6, 10: Maybe numpy.roll is indeed not efficiently implemented
- 21: Same for this scipy function

-=- Olivier

2011/9/26 Keith Hughitt <keith.hughitt@gmail.com>

> Hi all,
>
> Myself and several colleagues have recently started work on a Python
> library for solar physics <http://www.sunpy.org/>, in order to provide an
> alternative to the current mainstay for solar physics<http://www.lmsal.com/solarsoft/>,
> which is written in IDL.
>
> One of the first steps we have taken is to create a Python port<https://github.com/sunpy/sunpy/blob/master/benchmarks/time_test3.py>of a popular benchmark for IDL (time_test3) which measures performance for a
> variety of (primarily matrix) operations. In our initial attempt, however,
> Python performs significantly poorer than IDL for several of the tests. I
> have attached a graph which shows the results for one machine: the x-axis is
> the test # being compared, and the y-axis is the time it took to complete
> the test, in milliseconds. While it is possible that this is simply due to
> limitations in Python/Numpy, I suspect that this is due at least in part to
> our lack in familiarity with NumPy and SciPy.
>
> So my question is, does anyone see any places where we are doing things
> very inefficiently in Python?
>
> In order to try and ensure a fair comparison between IDL and Python there
> are some things (e.g. the style of timing and output) which we have
> deliberately chosen to do a certain way. In other cases, however, it is
> likely that we just didn't know a better method.
>
> Any feedback or suggestions people have would be greatly appreciated.
> Unfortunately, due to the proprietary nature of IDL, we cannot share the
> original version of time_test3, but hopefully the comments in time_test3.py
> will be clear enough.
>
> Thanks!
> Keith
>
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