[Numpy-discussion] [EXTERNAL] Re: Strange PyArray_FromObject() behavior

Bill Spotz wfspotz@sandia....
Thu Feb 16 23:41:02 CST 2012


Val,

The problem occurs in function

  PyArrayObject* obj_to_array_allow_conversion(PyObject* input,
                                               int typecode,
					       int* is_new_object)

in numpy.i (which is the numpy SWIG interface file that I authored and is in the numpy distribution).  The argument "input" comes in as a python int of value 0, "typecode" is NPY_NOTYPE to signify that the type should be detected, and "is_new_object" is an output flag.  This function calls

  PyArray_FromObject(input, typecode, 0, 0)

This is, in fact, a part of the PyTrilinos package, specifically the Teuchos module (Teuchos is our general tools package).  The context here is the Teuchos Comm classes' reduce() method, in this case a summation over processors.  We will be working with Tpetra classes that are built on top of a Teuchos Comm class.

Thanks,
Bill

On Feb 16, 2012, at 9:37 PM, Val Kalatsky wrote:

> 
> Hi Bill, 
> 
> Looks like you are running a very fresh version of numpy. 
> Without knowing the build version and what's going on in the extension module I can't tell you much.
> The usual suspects would be:
> 1) Numpy bug, not too likely.
> 2) Incorrect use of PyArray_FromObject, you'll need to send more info. 
> 3) Something is seriously corrupted, probably not the case, because segfault would follow quickly. 
> 
> Please provide more info.
> Val
> 
> PS Is it something related to what we'll be working on (Trilinos)?
> 
> 
> On Thu, Feb 16, 2012 at 11:09 AM, Spotz, William F <wfspotz@sandia.gov> wrote:
> I have a user who is reporting tests that are failing on his platform.  I have not been able to reproduce the error on my system, but working with him, we have isolated the problem to unexpected results when PyArray_FromObject() is called.  Here is the chain of events:
> 
> In python, an integer is calculated.  Specifically, it is
> 
>     len(result.errors) + len(result.failures)
> 
> where result is a unit test result object from the unittest module.  I had him verify that this value was in fact a python integer.  In my extension module, this PyObject gets passed to the PyArray_FromObject() function in a routine that comes from numpy.i.  What I expect, and what I typically get, is a numpy scalar array of type C long.  I had my user print the result using PyObject_Print() and what he got was
> 
>     array([0:00:00], dtype=timedelta64[us])
> 
> I am stuck as to why this might be happening.  Any ideas?
> 
> Thanks
> 
> ** Bill Spotz                                              **
> ** Sandia National Laboratories  Voice: (505)845-0170      **
> ** P.O. Box 5800                 Fax:   (505)284-0154      **
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