[Numpy-discussion] Pull request: Split maskna support out of mainline into a branch

Nathaniel Smith njs@pobox....
Sun Jun 17 16:52:55 CDT 2012


On Jun 17, 2012 9:37 PM, "David Cournapeau" <cournape@gmail.com> wrote:
>
>
>
> On Sat, Jun 16, 2012 at 9:39 PM, Nathaniel Smith <njs@pobox.com> wrote:
>>
>> On Thu, Jun 14, 2012 at 5:20 PM, David Cournapeau <cournape@gmail.com>
wrote:
>> >
>> >
>> > On Thu, Jun 14, 2012 at 5:17 PM, Nathaniel Smith <njs@pobox.com> wrote:
>> >>
>> >> On Wed, Jun 6, 2012 at 11:08 PM, Nathaniel Smith <njs@pobox.com>
wrote:
>> >> > Just submitted this pull request for discussion:
>> >> >  https://github.com/numpy/numpy/pull/297
>> >> >
>> >> > As per earlier discussion on the list, this PR attempts to remove
>> >> > exactly and only the maskna-related code from numpy mainline:
>> >> >
http://mail.scipy.org/pipermail/numpy-discussion/2012-May/062417.html
>> >> >
>> >> > The suggestion is that we merge this to master for the 1.7 release,
>> >> > and immediately "git revert" it on a branch so that it can be
modified
>> >> > further without blocking the release.
>> >> >
>> >> > The first patch does the actual maskna removal; the second and third
>> >> > rearrange things so that PyArray_ReduceWrapper does not end up in
the
>> >> > public API, for reasons described therein.
>> >> >
>> >> > All tests pass with Python 2.4, 2.5, 2.6, 2.7, 3.1, 3.2 on 64-bit
>> >> > Ubuntu. The docs also appear to build. Before I re-based this I also
>> >> > tested against Scipy, matplotlib, and pandas, and all were fine.
>> >>
>> >> While it's tempting to think that the lack of response to this
>> >> email/PR indicates that everyone now agrees with me about how to
>> >> proceed with the NA work, I'm for some reason unconvinced...
>> >>
>> >> Any objections to merging this?
>> >
>> >
>> > No objection, but could you wait for this WE ? I am in the middle of
setting
>> > up a buildbot for windows for numpy (for both mingw and MSVC
compilers), and
>> > that would be a good way to test it.
>>
>> Sounds like we have consensus and the patch is good to go, so let me
>> know when you're ready...
>
>
> Setting up the windows builbot is even more of a pain than I expected :(
>
> In the end, I just tested your branch with MSVC for python 2.7 (32 bits),
and got the following errors related to NA:
>
> ======================================================================
> ERROR: test_numeric.TestIsclose.test_masked_arrays
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "C:\Python27\lib\site-packages\nose-1.1.2-py2.7.egg\nose\case.py",
line 197, in runTest
>     self.test(*self.arg)
>   File "C:\Users\david\tmp\numpy-git\numpy\core\tests\test_numeric.py",
line 1274, in test_masked_arrays
>     assert_(type(x) == type(isclose(inf, x)))
>   File "C:\Users\david\tmp\numpy-git\numpy\core\numeric.py", line 2073,
in isclose
>     cond[~finite] = (x[~finite] == y[~finite])
>   File "C:\Users\david\tmp\numpy-git\numpy\ma\core.py", line 3579, in
__eq__
>     check = ndarray.__eq__(self.filled(0), odata).view(type(self))
> AttributeError: 'NotImplementedType' object has no attribute 'view'
>
> ======================================================================
> ERROR: Test a special case for var
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "C:\Users\david\tmp\numpy-git\numpy\ma\tests\test_core.py", line
2735, in test_varstd_specialcases
>     _ = method(out=nout)
>   File "C:\Users\david\tmp\numpy-git\numpy\ma\core.py", line 4778, in std
>     dvar = sqrt(dvar)
>   File "C:\Users\david\tmp\numpy-git\numpy\ma\core.py", line 849, in
__call__
>     m |= self.domain(d)
>   File "C:\Users\david\tmp\numpy-git\numpy\ma\core.py", line 801, in
__call__
>     return umath.less(x, self.critical_value)
> RuntimeWarning: invalid value encountered in less
>

Oh man wtf. Before I start trying to debug these with my mind, could you
confirm real quick that you don't see these with master?

-n
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