[Numpy-discussion] Bus error for Debian / SPARC on current trunk

[Matthew Brett]

Hi,

On Mon, Mar 5, 2012 at 8:04 PM, Mark Wiebe <mwwiebe@gmail.com> wrote:
> I've pushed a bugfix to github, can you confirm that the crash goes away on
> your test box? Thanks for tracking that down, the stack trace was very
> helpful. Since x86 machines don't have as strict alignment requirements,
> bugs like this one will generally remain undetected until someone tests on
> an architecture like sparc.

Thanks - no Bus error.  For your enjoyment: there were some failures
and errors from numpy.test("full")

======================================================================
ERROR: test_numeric.TestIsclose.test_ip_isclose_allclose([1e-08, 1,
1000020.0000000099], [0, nan, 1000000.0])
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/nose-1.1.2-py2.6.egg/nose/case.py",
line 197, in runTest
    self.test(*self.arg)
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/core/tests/test_numeric.py",
line 1288, in tst_isclose_allclose
    assert_array_equal(isclose(x, y).all(), allclose(x, y), msg % (x, y))
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/core/numeric.py",
line 2020, in allclose
    return all(less_equal(absolute(x-y), atol + rtol * absolute(y)))
RuntimeWarning: invalid value encountered in absolute

======================================================================
ERROR: test_numeric.TestIsclose.test_ip_isclose_allclose(nan, [nan, nan, nan])
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/nose-1.1.2-py2.6.egg/nose/case.py",
line 197, in runTest
    self.test(*self.arg)
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/core/tests/test_numeric.py",
line 1288, in tst_isclose_allclose
    assert_array_equal(isclose(x, y).all(), allclose(x, y), msg % (x, y))
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/core/numeric.py",
line 2020, in allclose
    return all(less_equal(absolute(x-y), atol + rtol * absolute(y)))
RuntimeWarning: invalid value encountered in absolute

======================================================================
ERROR: Test a special case for var
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/ma/tests/test_core.py",
line 2725, in test_varstd_specialcases
    _ = method(out=nout)
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/ma/core.py",
line 4778, in std
    dvar = sqrt(dvar)
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/ma/core.py",
line 849, in __call__
    m |= self.domain(d)
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/ma/core.py",
line 801, in __call__
    return umath.less(x, self.critical_value)
RuntimeWarning: invalid value encountered in less

======================================================================
FAIL: test_complex_dtype_repr (test_dtype.TestString)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/core/tests/test_dtype.py",
line 401, in test_complex_dtype_repr
    "dtype([('a', '<M8[D]'), ('b', '<m8[us]')])")
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/testing/utils.py",
line 313, in assert_equal
    raise AssertionError(msg)
AssertionError:
Items are not equal:
 ACTUAL: "dtype([('a', '>M8[D]'), ('b', '>m8[us]')])"
 DESIRED: "dtype([('a', '<M8[D]'), ('b', '<m8[us]')])"

======================================================================
FAIL: test_complex_dtype_str (test_dtype.TestString)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/core/tests/test_dtype.py",
line 353, in test_complex_dtype_str
    "[('a', '<m8[D]'), ('b', '<M8[us]')]")
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/testing/utils.py",
line 313, in assert_equal
    raise AssertionError(msg)
AssertionError:
Items are not equal:
 ACTUAL: "[('a', '>m8[D]'), ('b', '>M8[us]')]"
 DESIRED: "[('a', '<m8[D]'), ('b', '<M8[us]')]"

======================================================================
FAIL: test_kind.TestKind.test_all
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/nose-1.1.2-py2.6.egg/nose/case.py",
line 197, in runTest
    self.test(*self.arg)
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/f2py/tests/test_kind.py",
line 30, in test_all
    'selectedrealkind(%s): expected %r but got %r' %  (i,
selected_real_kind(i), selectedrealkind(i)))
  File "/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy/testing/utils.py",
line 34, in assert_
    raise AssertionError(msg)
AssertionError: selectedrealkind(16): expected 10 but got 16

----------------------------------------------------------------------
Ran 3693 tests in 362.416s

FAILED (KNOWNFAIL=3, SKIP=6, errors=3, failures=3)
Running unit tests for numpy
NumPy version 1.7.0.dev-7c07089
NumPy is installed in
/home/matthew/.virtualenvs/np-devel/lib/python2.6/site-packages/numpy
Python version 2.6.6 (r266:84292, Dec 26 2010, 23:29:26) [GCC 4.4.5
20100913 (prerelease)]
nose version 1.1.2

Thanks,

Matthew