[Numpy-discussion] scipy build errors

raghu330 raghu330@gmail....
Thu Feb 28 06:58:42 CST 2013


Dear All,

I am trying to install iris, which needs scipy0.10 or above. My machine is
RHEL6 with gfortran and g95 installed. I was able to install numpy without
any trouble, but have issues with scipy. I have installed ATLAS, BLAS and
LAPACK, but I still get this error. Kindly let me know how to go ahead..

Thanks in advance & Regards
Raghu

-----------------
/opt/python2.7.3/bin/python setup.py build --fcompiler=gfortran
Running from scipy source directory.
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /opt/python2.7.3/lib
  libraries mkl,vml,guide not found in /usr/local/lib64
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /opt/lib
  libraries mkl,vml,guide not found in /usr/lib64
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /opt/python2.7.3/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /opt/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/atlas
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  NOT AVAILABLE

atlas_blas_info:
  libraries f77blas,cblas,atlas not found in /opt/python2.7.3/lib
  libraries f77blas,cblas,atlas not found in /usr/local/lib64
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries f77blas,cblas,atlas not found in /opt/lib
  libraries f77blas,cblas,atlas not found in /usr/lib64/atlas
  libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
  libraries f77blas,cblas,atlas not found in /usr/lib64
  libraries f77blas,cblas,atlas not found in /usr/lib
  NOT AVAILABLE

/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info.py:1425
: UserWarning: 
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
  libraries blas not found in /opt/python2.7.3/lib
  libraries blas not found in /usr/local/lib64
  libraries blas not found in /usr/local/lib
  libraries blas not found in /opt/lib
  libraries blas not found in /usr/lib64
  libraries blas not found in /usr/lib
  NOT AVAILABLE

/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info.py:1434
: UserWarning: 
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.
  warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
  NOT AVAILABLE

/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info.py:1437
: UserWarning: 
    Blas (http://www.netlib.org/blas/) sources not found.
    Directories to search for the sources can be specified in the
    numpy/distutils/site.cfg file (section [blas_src]) or by setting
    the BLAS_SRC environment variable.
  warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
  File "setup.py", line 208, in <module>
    setup_package()
  File "setup.py", line 199, in setup_package
    configuration=configuration )
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/core.py", l
ine 152, in setup
    config = configuration()
  File "setup.py", line 136, in configuration
    config.add_subpackage('scipy')
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 1002, in add_subpackage
    caller_level = 2)
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 971, in get_subpackage
    caller_level = caller_level + 1)
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 908, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/setup.py", line 8, in configuration
    config.add_subpackage('integrate')
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 1002, in add_subpackage
    caller_level = 2)
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 971, in get_subpackage
    caller_level = caller_level + 1)
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 908, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/integrate/setup.py", line 10, in configuration
    blas_opt = get_info('blas_opt',notfound_action=2)
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info
.py", line 321, in get_info
    return cl().get_info(notfound_action)
  File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info
.py", line 472, in get_info
    raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError: 
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.


------------------------------------ EOM
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