[SciPy-dev] scipy_core Solaris Build: Good and Bad News

Christopher Hanley chanley at stsci.edu
Fri Oct 21 12:14:29 CDT 2005


> Could you please run scipy.test(10,10) to get a better idea where the 
> bus error is occurring?
 >>> import scipy
 >>> scipy.test(10,10)
scipy/base/tests/test_scimath.py
    !! No test file 'test_scimath.py' found for <module 
'scipy.base.scimath' from 'scipy/base/scimath.pyc'>
scipy/basic/tests/test_fft.py
    !! No test file 'test_fft.py' found for <module 'scipy.basic.fft' 
from 'scipy/basic/fft.pyc'>
scipy/tests/test_scipy.py
    !! No test file 'test_scipy.py' found for <module 'scipy' from 
'scipy/__init__.pyc'>
scipy/test/tests/test_testing.py
    !! No test file 'test_testing.py' found for <module 
'scipy.test.testing' from 'scipy/test/testing.pyc'>
   Found 2 tests for scipy.base.umath
   Found 23 tests for scipy.base.function_base
scipy/base/tests/test_machar.py
    !! No test file 'test_machar.py' found for <module 
'scipy.base.machar' from 'scipy/base/machar.pyc'>
scipy/test/tests/test_test.py
    !! No test file 'test_test.py' found for <module 'scipy.test' from 
'scipy/test/__init__.pyc'>
scipy/base/tests/test_ma.py
    !! No test file 'test_ma.py' found for <module 'scipy.base.ma' from 
'scipy/base/ma.pyc'>
scipy/base/tests/test_numerictypes.py
    !! No test file 'test_numerictypes.py' found for <module 
'scipy.base.numerictypes' from 'scipy/base/numerictypes.pyc'>
scipy/basic/tests/test_basic_lite.py
    !! No test file 'test_basic_lite.py' found for <module 
'scipy.basic.basic_lite' from 'scipy/basic/basic_lite.pyc'>
scipy/tests/test_core_version.py
    !! No test file 'test_core_version.py' found for <module 
'scipy.core_version' from 'scipy/core_version.pyc'>
   Found 4 tests for scipy.base.getlimits
   Found 9 tests for scipy.base.twodim_base
scipy/basic/tests/test_fft_lite.py
    !! No test file 'test_fft_lite.py' found for <module 
'scipy.basic.fft_lite' from 'scipy/basic/fft_lite.pyc'>
scipy/base/tests/test__compiled_base.py
    !! No test file 'test__compiled_base.py' found for <module 
'scipy.base._compiled_base' from 'scipy/base/_compiled_base.so'>
scipy/base/tests/test_info_scipy_base.py
    !! No test file 'test_info_scipy_base.py' found for <module 
'scipy.base.info_scipy_base' from 'scipy/base/info_scipy_base.pyc'>
scipy/base/tests/test_ufunclike.py
    !! No test file 'test_ufunclike.py' found for <module 
'scipy.base.ufunclike' from 'scipy/base/ufunclike.pyc'>
scipy/test/tests/test_info_scipy_test.py
    !! No test file 'test_info_scipy_test.py' found for <module 
'scipy.test.info_scipy_test' from 'scipy/test/info_scipy_test.pyc'>
scipy/basic/tests/test_basic.py
    !! No test file 'test_basic.py' found for <module 'scipy.basic' from 
'scipy/basic/__init__.pyc'>
scipy/basic/tests/test_linalg.py
    !! No test file 'test_linalg.py' found for <module 
'scipy.basic.linalg' from 'scipy/basic/linalg.pyc'>
scipy/test/tests/test_scipy_test_version.py
    !! No test file 'test_scipy_test_version.py' found for <module 
'scipy.test.scipy_test_version' from '...py/test/scipy_test_version.pyc'>
scipy/base/tests/test_base.py
    !! No test file 'test_base.py' found for <module 'scipy.base' from 
'scipy/base/__init__.pyc'>
scipy/base/tests/test_convertcode.py
    !! No test file 'test_convertcode.py' found for <module 
'scipy.base.convertcode' from 'scipy/base/convertcode.pyc'>
scipy/lib/tests/test_lib.py
    !! No test file 'test_lib.py' found for <module 'scipy.lib' from 
'scipy/lib/__init__.pyc'>
scipy/base/tests/test_multiarray.py
    !! No test file 'test_multiarray.py' found for <module 
'scipy.base.multiarray' from 'scipy/base/multiarray.so'>
   Found 3 tests for scipy.base.matrix
scipy/base/tests/test_oldnumeric.py
    !! No test file 'test_oldnumeric.py' found for <module 
'scipy.base.oldnumeric' from 'scipy/base/oldnumeric.pyc'>
   Found 44 tests for scipy.base.shape_base
scipy/base/tests/test_numeric.py
    !! No test file 'test_numeric.py' found for <module 
'scipy.base.numeric' from 'scipy/base/numeric.pyc'>
scipy/lib/tests/test_fftpack_lite.py
    !! No test file 'test_fftpack_lite.py' found for <module 
'scipy.lib.fftpack_lite' from 'scipy/lib/fftpack_lite.so'>
scipy/lib/tests/test_lapack_lite.py
    !! No test file 'test_lapack_lite.py' found for <module 
'scipy.lib.lapack_lite' from 'scipy/lib/lapack_lite.so'>
scipy/base/tests/test_polynomial.py
    !! No test file 'test_polynomial.py' found for <module 
'scipy.base.polynomial' from 'scipy/base/polynomial.pyc'>
   Found 42 tests for scipy.base.type_check
scipy/test/tests/test_test.py
    !! No test file 'test_test.py' found for <module 'scipy.test' from 
'scipy/test/__init__.pyc'>
scipy/base/tests/test_machar.py
    !! No test file 'test_machar.py' found for <module 
'scipy.base.machar' from 'scipy/base/machar.pyc'>
   Found 4 tests for scipy.base.index_tricks
scipy/basic/tests/test_random.py
    !! No test file 'test_random.py' found for <module 
'scipy.basic.random' from 'scipy/basic/random.pyc'>
   Found 0 tests for __main__
check_reduce_complex (scipy.base.umath.test_umath.test_maximum) ... ok
check_reduce_complex (scipy.base.umath.test_umath.test_minimum) ... ok
check_basic (scipy.base.function_base.test_function_base.test_all) ... ok
check_nd (scipy.base.function_base.test_function_base.test_all) ... ok
check_basic (scipy.base.function_base.test_function_base.test_amax) ... ok
check_basic (scipy.base.function_base.test_function_base.test_amin) ... ok
check_basic (scipy.base.function_base.test_function_base.test_angle) ... ok
check_basic (scipy.base.function_base.test_function_base.test_any) ... ok
check_nd (scipy.base.function_base.test_function_base.test_any) ... ok
check_basic (scipy.base.function_base.test_function_base.test_cumprod) 
... ok
check_basic (scipy.base.function_base.test_function_base.test_cumsum) ... ok
check_basic (scipy.base.function_base.test_function_base.test_diff) ... ok
check_nd (scipy.base.function_base.test_function_base.test_diff) ... ok
check_basic (scipy.base.function_base.test_function_base.test_extins) ... ok
check_both (scipy.base.function_base.test_function_base.test_extins) ... ok
check_insert (scipy.base.function_base.test_function_base.test_extins) 
... ok
check_basic (scipy.base.function_base.test_function_base.test_linspace) 
... ok
check_basic (scipy.base.function_base.test_function_base.test_logspace) 
... ok
check_basic (scipy.base.function_base.test_function_base.test_prod) ... ok
check_basic (scipy.base.function_base.test_function_base.test_ptp) ... ok
check_basic 
(scipy.base.function_base.test_function_base.test_trim_zeros) ... ok
check_leading_skip 
(scipy.base.function_base.test_function_base.test_trim_zeros) ... ok
check_trailing_skip 
(scipy.base.function_base.test_function_base.test_trim_zeros) ... ok
check_scalar 
(scipy.base.function_base.test_function_base.test_vectorize) ... Bus 
error (core dumped)
basil> dir
core    scipy/

> Also run
> 
> print scipy.__core_version__
> 
In [1]: import scipy

In [2]: scipy.__core_version__
Out[2]: '0.4.3.1330'


> We still have to figure out why the isnan function is being picked up by 
> configure but not by the compilation stage.

I have not found any compile time flags that are specific is isinf or 
isnan.  I don't believe this is a compiler problem given its occurence 
under both Sun and GNU compilers.

I will keep looking.

Chris




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