[SciPy-dev] Stineman interpolation
John Hunter
jdhunter at ace.bsd.uchicago.edu
Tue Apr 4 08:31:37 CDT 2006
A couple of matplotlib users, who know much more about these matters
than I do, put together this interpolation routine which they feel is
superior and better behaved than many out there. With minor tweaks
this may be suitable for scipy.interpolate (it currently lives in
matplotlib.mlab svn)
def slopes(x,y):
"""
SLOPES calculate the slope y'(x) Given data vectors X and Y SLOPES
calculates Y'(X), i.e the slope of a curve Y(X). The slope is
estimated using the slope obtained from that of a parabola through
any three consecutive points.
This method should be superior to that described in the appendix
of A CONSISTENTLY WELL BEHAVED METHOD OF INTERPOLATION by Russel
W. Stineman (Creative Computing July 1980) in at least one aspect:
Circles for interpolation demand a known aspect ratio between x-
and y-values. For many functions, however, the abscissa are given
in different dimensions, so an aspect ratio is completely
arbitrary.
The parabola method gives very similar results to the circle
method for most regular cases but behaves much better in special
cases
Norbert Nemec, Institute of Theoretical Physics, University or
Regensburg, April 2006 Norbert.Nemec at physik.uni-regensburg.de
(inspired by a original implementation by Halldor Bjornsson,
Icelandic Meteorological Office, March 2006 halldor at vedur.is)
"""
# Cast key variables as float.
x=nx.asarray(x, nx.Float)
y=nx.asarray(y, nx.Float)
yp=nx.zeros(y.shape, nx.Float)
dx=x[1:] - x[:-1]
dy=y[1:] - y[:-1]
dydx = dy/dx
yp[1:-1] = (dydx[:-1] * dx[1:] + dydx[1:] * dx[:-1])/(dx[1:] + dx[:-1])
yp[0] = 2.0 * dy[0]/dx[0] - yp[1]
yp[-1] = 2.0 * dy[-1]/dx[-1] - yp[-2]
return yp
def stineman_interp(xi,x,y,yp=None):
"""
STINEMAN_INTERP Well behaved data interpolation. Given data
vectors X and Y, the slope vector YP and a new abscissa vector XI
the function stineman_interp(xi,x,y,yp) uses Stineman
interpolation to calculate a vector YI corresponding to XI.
Here's an example that generates a coarse sine curve, then
interpolates over a finer abscissa:
x = linspace(0,2*pi,20); y = sin(x); yp = cos(x)
xi = linspace(0,2*pi,40);
yi = stineman_interp(xi,x,y,yp);
plot(x,y,'o',xi,yi)
The interpolation method is described in the article A
CONSISTENTLY WELL BEHAVED METHOD OF INTERPOLATION by Russell
W. Stineman. The article appeared in the July 1980 issue of
Creative computing with a note from the editor stating that while
they were
not an academic journal but once in a while something serious
and original comes in adding that this was
"apparently a real solution" to a well known problem.
For yp=None, the routine automatically determines the slopes using
the "slopes" routine.
X is assumed to be sorted in increasing order
For values xi[j] < x[0] or xi[j] > x[-1], the routine tries a
extrapolation. The relevance of the data obtained from this, of
course, questionable...
original implementation by Halldor Bjornsson, Icelandic
Meteorolocial Office, March 2006 halldor at vedur.is
completely reworked and optimized for Python by Norbert Nemec,
Institute of Theoretical Physics, University or Regensburg, April
2006 Norbert.Nemec at physik.uni-regensburg.de
"""
# Cast key variables as float.
x=nx.asarray(x, nx.Float)
y=nx.asarray(y, nx.Float)
assert x.shape == y.shape
N=len(y)
if yp is None:
yp = slopes(x,y)
else:
yp=nx.asarray(yp, nx.Float)
xi=nx.asarray(xi, nx.Float)
yi=nx.zeros(xi.shape, nx.Float)
# calculate linear slopes
dx = x[1:] - x[:-1]
dy = y[1:] - y[:-1]
s = dy/dx #note length of s is N-1 so last element is #N-2
# find the segment each xi is in
# this line actually is the key to the efficiency of this implementation
idx = nx.searchsorted(x[1:-1], xi)
# now we have generally: x[idx[j]] <= xi[j] <= x[idx[j]+1]
# except at the boundaries, where it may be that xi[j] < x[0] or xi[j] > x[-1]
# the y-values that would come out from a linear interpolation:
sidx = nx.take(s, idx)
xidx = nx.take(x, idx)
yidx = nx.take(y, idx)
xidxp1 = nx.take(x, idx+1)
yo = yidx + sidx * (xi - xidx)
# the difference that comes when using the slopes given in yp
dy1 = (nx.take(yp, idx)- sidx) * (xi - xidx) # using the yp slope of the left point
dy2 = (nx.take(yp, idx+1)-sidx) * (xi - xidxp1) # using the yp slope of the right point
dy1dy2 = dy1*dy2
# The following is optimized for Python. The solution actually
# does more calculations than necessary but exploiting the power
# of numpy, this is far more efficient than coding a loop by hand
# in Python
yi = yo + dy1dy2 * nx.choose(nx.array(nx.sign(dy1dy2), nx.Int32)+1,
((2*xi-xidx-xidxp1)/((dy1-dy2)*(xidxp1-xidx)),
0.0,
1/(dy1+dy2),))
return yi
# Here is some example code
from pylab import figure, show, nx, linspace, stineman_interp
x = linspace(0,2*nx.pi,20);
y = nx.sin(x); yp = None
xi = linspace(x[0],x[-1],100);
yi = stineman_interp(xi,x,y,yp);
fig = figure()
ax = fig.add_subplot(111)
ax.plot(x,y,'ro',xi,yi,'-b.')
show()
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