[SciPy-dev] scipy svn 2186 test() other failures (on hppa)

Nicolas Limare nicolist at limare.net
Mon Sep 4 08:10:52 CDT 2006


built on numpy svn3107.
python 2.3.5, gcc 3.3.5, debian sarge
linux 2.6.8-3-32 parisc (hp-pa)

In [3]: import scipy
Overwriting info=<function info at 0x40e4e9b0> from scipy.misc (was
<function info at 0x40742170> from numpy.lib.utils)
In [4]: scipy.test()
Overwriting fft=<function fft at 0x40e12ef0> from scipy.fftpack.basic
(was <module 'numpy.fft' from
'/usr/lib/python2.3/site-packages/numpy/fft/__init__.pyc'> from
/usr/lib/python2.3/site-packages/numpy/fft/__init__.pyc)
import lib.lapack -> failed:
/usr/lib/python2.3/site-packages/scipy/lib/lapack/flapack.so: undefined
symbol: PyArray_API
  Found 4 tests for scipy.linsolve.umfpack.umfpack
  Found 4 tests for scipy.io.array_import
  Found 128 tests for scipy.linalg.fblas
  Found 397 tests for scipy.ndimage
  Found 10 tests for scipy.integrate.quadpack
  Found 97 tests for scipy.stats.stats
  Found 47 tests for scipy.linalg.decomp
  Found 2 tests for scipy.integrate.quadrature
  Found 95 tests for scipy.sparse.sparse
  Found 20 tests for scipy.fftpack.pseudo_diffs
  Found 6 tests for scipy.optimize.optimize
  Found 5 tests for scipy.interpolate.fitpack
  Found 1 tests for scipy.interpolate
  Found 70 tests for scipy.stats.distributions
  Found 12 tests for scipy.io.mmio
  Found 10 tests for scipy.stats.morestats
  Found 4 tests for scipy.linalg.lapack
  Found 18 tests for scipy.fftpack.basic
  Found 4 tests for scipy.optimize.zeros
  Found 17 tests for scipy.io.mio
  Found 4 tests for scipy.fftpack.helper
  Found 41 tests for scipy.linalg.basic
  Found 2 tests for scipy.maxentropy.maxentropy
  Found 358 tests for scipy.special.basic
  Found 128 tests for scipy.lib.blas.fblas
  Found 7 tests for scipy.linalg.matfuncs
Warning: FAILURE importing tests for <module 'scipy.lib.lapack' from
'.../scipy/lib/lapack/__init__.pyc'>
/usr/lib/python2.3/site-packages/scipy/lib/lapack/__init__.py:15:
ImportError:
/usr/lib/python2.3/site-packages/scipy/lib/lapack/flapack.so: undefined
symbol: PyArray_API (in ?)
  Found 1 tests for scipy.optimize.cobyla
  Found 16 tests for scipy.lib.blas
  Found 1 tests for scipy.integrate
  Found 14 tests for scipy.linalg.blas
  Found 4 tests for scipy.signal.signaltools
  Found 0 tests for __main__
data-ftype: z compared to data D
Calling _superlu.zgssv
Use minimum degree ordering on A'+A.
.data-ftype: c compared to data F
Calling _superlu.cgssv
Use minimum degree ordering on A'+A.
.data-ftype: d compared to data d
Calling _superlu.dgssv
Use minimum degree ordering on A'+A.
.data-ftype: s compared to data f
Calling _superlu.sgssv
Use minimum degree ordering on A'+A.
.
Don't worry about a warning regarding the number of bytes read.
Warning: 1000000 bytes requested, 20 bytes read.
.......caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................Took
13 points.
..........Resizing... 16 17 24
Resizing... 20 7 35
Resizing... 23 7 47
Resizing... 24 25 58
Resizing... 28 7 68
Resizing... 28 27 73
.....Use minimum degree ordering on A'+A.
........................Use minimum degree ordering on A'+A.
...................Resizing... 16 17 24
Resizing... 20 7 35
Resizing... 23 7 47
Resizing... 24 25 58
Resizing... 28 7 68
Resizing... 28 27 73
.....Use minimum degree ordering on A'+A.
.................Resizing... 16 17 24
Resizing... 20 7 35
Resizing... 23 7 47
Resizing... 24 25 58
Resizing... 28 7 68
Resizing... 28 27 73
.....Use minimum degree ordering on A'+A.
....................................../usr/lib/python2.3/site-packages/scipy/interpolate/fitpack2.py:410:
UserWarning:
The coefficients of the spline returned have been computed as the
minimal norm least-squares solution of a (numerically) rank deficient
system (deficiency=7). If deficiency is large, the results may be
inaccurate. Deficiency may strongly depend on the value of eps.
  warnings.warn(message)
................FF........F...............................................................Ties
preclude use of exact statistic.
..Ties preclude use of exact statistic.
.FF.............................................Warning: 184549376 bytes
requested, 73 bytes read.
F..............................................................................................................................................................................................................................................................................F..................F..................................FF..................................................................................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
...Result may be inaccurate, approximate err = 1.24142097959e-08
...Result may be inaccurate, approximate err = 3.90044584243e-10
...................Residual: 1.05006987327e-07
...................
======================================================================
FAIL: check_cdf (scipy.stats.tests.test_distributions.test_chi)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "<string>", line 9, in check_cdf
AssertionError: D = 0.611395254754; pval = 1.3262280163e-11; alpha = 0.01
args = (1.5671875277704621,)

======================================================================
FAIL: check_cdf (scipy.stats.tests.test_distributions.test_chi2)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "<string>", line 9, in check_cdf
AssertionError: D = 0.300736970157; pval = 0.00333143555133; alpha = 0.01
args = (1.4249100071916856,)

======================================================================
FAIL: check_cdf (scipy.stats.tests.test_distributions.test_fatiguelife)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "<string>", line 9, in check_cdf
AssertionError: D = 0.341252570181; pval = 0.000636283285767; alpha = 0.01
args = (1.1031049127753509,)

======================================================================
FAIL: check_data (scipy.stats.tests.test_morestats.test_bartlett)
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/lib/python2.3/site-packages/scipy/stats/tests/test_morestats.py",
line 90, in check_data
    assert_almost_equal(pval,0.0136358632781,7)
  File "/usr/lib/python2.3/site-packages/numpy/testing/utils.py", line
154, in assert_almost_equal
    return assert_array_almost_equal(actual, desired, decimal, err_msg)
  File "/usr/lib/python2.3/site-packages/numpy/testing/utils.py", line
230, in assert_array_almost_equal
    header='Arrays are not almost equal')
  File "/usr/lib/python2.3/site-packages/numpy/testing/utils.py", line
215, in assert_array_compare
    assert cond, msg
AssertionError:
Arrays are not almost equal

(mismatch 100.0%)
 x: array(0.018126703796836161)
 y: array(0.013635863278099999)

======================================================================
FAIL: check_data (scipy.stats.tests.test_morestats.test_binom_test)
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/lib/python2.3/site-packages/scipy/stats/tests/test_morestats.py",
line 104, in check_data
    assert_almost_equal(pval,0.0018833009350757682,11)
  File "/usr/lib/python2.3/site-packages/numpy/testing/utils.py", line
156, in assert_almost_equal
    assert round(abs(desired - actual),decimal) == 0, msg
AssertionError:
Items are not equal:
 ACTUAL: 0.99999999999999989
 DESIRED: 0.0018833009350757682

======================================================================
FAIL: check loadmat case vec
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.3/site-packages/scipy/io/tests/test_mio.py",
line 80, in cc
    self._check_case(name, expected)
  File "/usr/lib/python2.3/site-packages/scipy/io/tests/test_mio.py",
line 74, in _check_case
    assert k in matdict, "Missing key at %s" % k_label
AssertionError: Missing key at Test 'vec',
file:/usr/lib/python2.3/site-packages/scipy/io/tests/./data/testvec_4_GLNX86.mat,
variable fit_params

======================================================================
FAIL: check_gammainc (scipy.special.tests.test_basic.test_gammainc)
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/lib/python2.3/site-packages/scipy/special/tests/test_basic.py",
line 996, in check_gammainc
    assert_almost_equal(gama,.7,1)
  File "/usr/lib/python2.3/site-packages/numpy/testing/utils.py", line
156, in assert_almost_equal
    assert round(abs(desired - actual),decimal) == 0, msg
AssertionError:
Items are not equal:
 ACTUAL: 0.90752671516550643
 DESIRED: 0.69999999999999996

======================================================================
FAIL: check_hyp1f1 (scipy.special.tests.test_basic.test_hyp1f1)
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/lib/python2.3/site-packages/scipy/special/tests/test_basic.py",
line 1144, in check_hyp1f1
    assert_almost_equal(hyp1, 1.3498588075760032,7)
  File "/usr/lib/python2.3/site-packages/numpy/testing/utils.py", line
156, in assert_almost_equal
    assert round(abs(desired - actual),decimal) == 0, msg
AssertionError:
Items are not equal:
 ACTUAL: 1.2898968548511782
 DESIRED: 1.3498588075760032

======================================================================
FAIL: check_k1 (scipy.special.tests.test_basic.test_k1)
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/lib/python2.3/site-packages/scipy/special/tests/test_basic.py",
line 1445, in check_k1
    assert_almost_equal(o1k,o1kr,8)
  File "/usr/lib/python2.3/site-packages/numpy/testing/utils.py", line
156, in assert_almost_equal
    assert round(abs(desired - actual),decimal) == 0, msg
AssertionError:
Items are not equal:
 ACTUAL: -3.4541289156353865e+280
 DESIRED: 9.853844780870606

======================================================================
FAIL: check_k1e (scipy.special.tests.test_basic.test_k1e)
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/lib/python2.3/site-packages/scipy/special/tests/test_basic.py",
line 1452, in check_k1e
    assert_almost_equal(o1ke,o1ker,8)
  File "/usr/lib/python2.3/site-packages/numpy/testing/utils.py", line
156, in assert_almost_equal
    assert round(abs(desired - actual),decimal) == 0, msg
AssertionError:
Items are not equal:
 ACTUAL: -3.8174028248444013e+280
 DESIRED: 10.890182683049698

----------------------------------------------------------------------
Ran 1527 tests in 33.493s

FAILED (failures=10)



-- 
Nico



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