[SciPy-dev] Scipy Compile and Testing Problem from SVN

Charles R Harris charlesr.harris@gmail....
Fri Apr 10 23:37:53 CDT 2009


On Fri, Apr 10, 2009 at 9:21 PM, <josef.pktd@gmail.com> wrote:

> On Fri, Apr 10, 2009 at 9:42 PM, Skipper Seabold <jsseabold@gmail.com>
> wrote:
> > Hello all,
> >
> > I am having some trouble compiling the development versions of Scipy
> > and Numpy from SVN and then getting the tests to run without errors.
> > >From the errors I've seen and having combed the archives, I wonder if
> > it's a compiler issue (gnu95 4.3.2).  Or most likely some other user
> > error...  So far I have tried to avoid installing ATLAS and LAPACK
> > from source.
> >
> > I am using openSUSE 11.1 (32-bit), Python 2.6, and the most recent
> > version of scipy and numpy from SVN.  I have installed the following
> > all from the openSUSE repo openSUSE_Education
> >
> > libatlas3
> > libatlas3-devel
> > blas
> > libblas3
> > libumfpack5_2_0
> > umfpack-devel
> > lapack
> > liblapack3
> > fftw
> > fftw-devel
> > fftw3
> > fftw3-devel
> > fftw3-threads
> > amd
> > amd-devel
> > libamd2_2_0
> >
> > For both Numpy and Scipy, I edited the site.cfg as I discovered was
> > necessary after a first go around.
> >
> > [DEFAULT]
> > library_dirs = /usr/local/lib:/usr/lib
> > include_dirs = /usr/local/include:/usr/include:/usr/include/suitesparse
> >
> > And uncommented blas, lapack (not the pthreads), amd, umfpack, fftw
> >
>

<snip>

>
>
> If I interpret Davids usually explanations and your logs correctly
> then you are mixing fortran compilers, lapack is using gfortran and
> you are using g95, which showed up pretty often on the mailing lists.
>
> But this is just pattern recognition, I don't know anything about opensuse.
>

IIRC, there was some problem with opensuse reported on the mailing list.
<searches> hmm, there was a 32/64 bit issue about two weeks ago. And there
are opensuse repositories with current numpy and scipy
here<http://download.opensuse.org/repositories/Education/>.


Chuck
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