[SciPy-dev] New build issue

Charles R Harris charlesr.harris@gmail....
Mon Nov 9 13:13:54 CST 2009


On Mon, Nov 9, 2009 at 12:01 PM, Charles R Harris <charlesr.harris@gmail.com
> wrote:

>
>
> On Mon, Nov 9, 2009 at 11:15 AM, Nils Wagner <nwagner@iam.uni-stuttgart.de
> > wrote:
>
>> In file included from scipy/integrate/_odepackmodule.c:6:
>> scipy/integrate/__odepack.h: In function ‘odepack_odeint’:
>> scipy/integrate/__odepack.h:328: warning: call to function
>> ‘lsoda_’ without a real prototype
>> scipy/integrate/__odepack.h:31: note: ‘lsoda_’ was
>> declared here
>> scipy/integrate/_odepackmodule.c: At top level:
>> scipy/integrate/multipack.h:114: warning:
>> ‘my_make_numpy_array’ defined but not used
>> scipy/integrate/__odepack.h: In function ‘odepack_odeint’:
>> scipy/integrate/__odepack.h:226: warning: ‘tcrit’ may be
>> used uninitialized in this function
>> scipy/integrate/__odepack.h:227: warning: ‘wa’ may be used
>> uninitialized in this function
>> /usr/bin/gfortran -Wall -Wall -shared
>> build/temp.linux-x86_64-2.6/scipy/integrate/_odepackmodule.o
>> -L/home/nwagner/src/ATLAS3.8.2/mybuild/lib -L/usr/lib64
>> -Lbuild/temp.linux-x86_64-2.6 -lodepack -llinpack_lite
>> -lmach -lptf77blas -lptcblas -latlas -lpython2.6
>> -lgfortran -o
>> build/lib.linux-x86_64-2.6/scipy/integrate/_odepack.so
>> building 'scipy.integrate.vode' extension
>> compiling C sources
>> C compiler: /usr/bin/gcc -fno-strict-aliasing -DNDEBUG
>> -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2
>> -fstack-protector -funwind-tables
>> -fasynchronous-unwind-tables -g -fwrapv -fPIC
>>
>> creating
>> build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy/integrate
>> compile options: '-DATLAS_INFO="\"3.8.2\""
>> -I/home/nwagner/src/ATLAS3.8.2/include
>> -Ibuild/src.linux-x86_64-2.6
>> -I/home/nwagner/local/lib64/python2.6/site-packages/numpy/core/include
>> -I/usr/include/python2.6 -c'
>> gcc:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
>> In function ‘cb_f_in_dvode__user__routines’:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
>> error: ‘y_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
>> error: (Each undeclared identifier is reported only once
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
>> error: for each function it appears in.)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
>> error: ‘n’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:377:
>> error: ‘ydot_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:335:
>> warning: unused variable ‘ipar_5’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:334:
>> warning: unused variable ‘rpar_4’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:332:
>> warning: unused variable ‘n_0’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
>> In function ‘cb_jac_in_dvode__user__routines’:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
>> error: ‘y_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
>> error: ‘n’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
>> error: ‘jac_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
>> error: ‘nrowpd’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
>> warning: left-hand operand of comma expression has no
>> effect
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:467:
>> warning: unused variable ‘ipar_8’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:466:
>> warning: unused variable ‘rpar_7’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:465:
>> warning: unused variable ‘nrowpd_6’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:464:
>> warning: unused variable ‘mu_4’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:463:
>> warning: unused variable ‘ml_3’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:461:
>> warning: unused variable ‘n_0’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
>> In function ‘cb_f_in_zvode__user__routines’:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
>> error: ‘y_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
>> error: ‘n’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:637:
>> error: ‘ydot_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:595:
>> warning: unused variable ‘ipar_5’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:594:
>> warning: unused variable ‘rpar_4’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:592:
>> warning: unused variable ‘n_0’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
>> In function ‘cb_jac_in_zvode__user__routines’:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
>> error: ‘y_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
>> error: ‘n’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
>> error: ‘jac_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
>> error: ‘nrowpd’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
>> warning: left-hand operand of comma expression has no
>> effect
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:727:
>> warning: unused variable ‘ipar_8’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:726:
>> warning: unused variable ‘rpar_7’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:725:
>> warning: unused variable ‘nrowpd_6’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:724:
>> warning: unused variable ‘mu_4’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:723:
>> warning: unused variable ‘ml_3’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:721:
>> warning: unused variable ‘n_0’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
>> In function ‘cb_f_in_dvode__user__routines’:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
>> error: ‘y_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
>> error: (Each undeclared identifier is reported only once
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
>> error: for each function it appears in.)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
>> error: ‘n’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:377:
>> error: ‘ydot_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:335:
>> warning: unused variable ‘ipar_5’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:334:
>> warning: unused variable ‘rpar_4’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:332:
>> warning: unused variable ‘n_0’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
>> In function ‘cb_jac_in_dvode__user__routines’:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
>> error: ‘y_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
>> error: ‘n’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
>> error: ‘jac_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
>> error: ‘nrowpd’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
>> warning: left-hand operand of comma expression has no
>> effect
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:467:
>> warning: unused variable ‘ipar_8’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:466:
>> warning: unused variable ‘rpar_7’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:465:
>> warning: unused variable ‘nrowpd_6’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:464:
>> warning: unused variable ‘mu_4’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:463:
>> warning: unused variable ‘ml_3’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:461:
>> warning: unused variable ‘n_0’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
>> In function ‘cb_f_in_zvode__user__routines’:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
>> error: ‘y_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
>> error: ‘n’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:637:
>> error: ‘ydot_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:595:
>> warning: unused variable ‘ipar_5’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:594:
>> warning: unused variable ‘rpar_4’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:592:
>> warning: unused variable ‘n_0’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
>> In function ‘cb_jac_in_zvode__user__routines’:
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
>> error: ‘y_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
>> error: ‘n’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
>> error: ‘jac_Dims’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
>> error: ‘nrowpd’ undeclared (first use in this function)
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
>> warning: left-hand operand of comma expression has no
>> effect
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:727:
>> warning: unused variable ‘ipar_8’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:726:
>> warning: unused variable ‘rpar_7’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:725:
>> warning: unused variable ‘nrowpd_6’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:724:
>> warning: unused variable ‘mu_4’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:723:
>> warning: unused variable ‘ml_3’
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:721:
>> warning: unused variable ‘n_0’
>> error: Command "/usr/bin/gcc -fno-strict-aliasing -DNDEBUG
>> -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2
>> -fstack-protector -funwind-tables
>> -fasynchronous-unwind-tables -g -fwrapv -fPIC
>> -DATLAS_INFO="\"3.8.2\""
>> -I/home/nwagner/src/ATLAS3.8.2/include
>> -Ibuild/src.linux-x86_64-2.6
>> -I/home/nwagner/local/lib64/python2.6/site-packages/numpy/core/include
>> -I/usr/include/python2.6 -c
>> build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c -o
>>
>> build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.o"
>> failed with exit status 1
>>
>>
> The problem file is generated by f2py. I'm going to guess that the recent
> changes to the numpy include files may have broken f2py. Although if that is
> the case I don't know why more files didn't fail.
>
>
There is also this recent change to f2py
http://projects.scipy.org/numpy/changeset/7712. Could you try backing that
out?

Chuck
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