[SciPy-dev] [SciPy-Dec] scipy.weave crashes for pure inline

Emmanuel Lambert Emmanuel.Lambert@intec.ugent...
Tue Oct 6 10:48:27 CDT 2009


For the record of the archives/mailinglist, I just want to mention that
there is a patch avaialble for the problem described below.
It can be found at : http://projects.scipy.org/scipy/ticket/855



> 
> 
> On Tue, 2009-09-22 at 14:47 -0700, Thomas Robitaille wrote:
> > Hi,
> > 
> > I'm using a recent svn revision of scipy (5925). After installing it I went
> > to scipy/weave/examples and ran 'python array3d.py'. I get the following
> > error message (below). Can other people reproduce this problem? If not,
> > maybe it's some local installation issue.
> > 
> > Thanks,
> > 
> > Thomas
> > 
> > ---
> > 
> > numpy:
> > [[[ 0  1  2  3]
> >   [ 4  5  6  7]
> >   [ 8  9 10 11]]
> > 
> >  [[12 13 14 15]
> >   [16 17 18 19]
> >   [20 21 22 23]]]
> > Pure Inline:
> > Traceback (most recent call last):
> >   File "array3d.py", line 105, in <module>
> >     main()
> >   File "array3d.py", line 98, in main
> >     pure_inline(arr)
> >   File "array3d.py", line 57, in pure_inline
> >     weave.inline(code, ['arr'])
> >   File
> > "/Users/tom/Library/Python/2.6/site-packages/scipy/weave/inline_tools.py",
> > line 324, in inline
> >     results = attempt_function_call(code,local_dict,global_dict)
> >   File
> > "/Users/tom/Library/Python/2.6/site-packages/scipy/weave/inline_tools.py",
> > line 392, in attempt_function_call
> >     function_list = function_catalog.get_functions(code,module_dir)
> >   File "/Users/tom/Library/Python/2.6/site-packages/scipy/weave/catalog.py",
> > line 615, in get_functions
> >     function_list = self.get_cataloged_functions(code)
> >   File "/Users/tom/Library/Python/2.6/site-packages/scipy/weave/catalog.py",
> > line 529, in get_cataloged_functions
> >     if cat is not None and code in cat:
> >   File
> > "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/shelve.py",
> > line 110, in __contains__
> >     return key in self.dict
> >   File
> > "/Users/tom/Library/Python/2.6/site-packages/scipy/io/dumbdbm_patched.py",
> > line 73, in __getitem__
> >     pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> -------------------------------------------------------------------
> 
> On Mon, 2009-09-21 at 16:46 +0200, Emmanuel Lambert wrote: 
> > Hi,
> > 
> > I compiled SciPy and Numpy on a machine with Scientific Linux.
> > 
> > We detected a problem with Weave and after
> > investigation, it turns out that some of the unit tests delivered
> > with Scipy-Weave also fail ! Below is a list of tests that fail in for
> > example the "test_c_spec" file. They all raise a KeyError.
> > 
> > This is with SciPy 0.7.1 on Python 2.6. I also downloaded the latest
> > Weave code again from the SVN repository, but the problem is not
> > resolved.
> > 
> > Any idea on how to tackle this problem? There are no posts that help
> > me further. I don't have this problem with the same standard scipy
> > package that was is available for Ubuntu 9.04 (apparently the weave
> > version number is the same).
> > 
> > It looks like the compilation works fine, see sample stdout also
> > below.
> > 
> > What could cause this? 
> > 
> > thanks for any help.
> > Emmanuel
> > 
> > ******************* SAMPLE OF STDOUT ******************
> > 
> > -------------------- >> begin captured stdout << ---------------------
> > <weave: compiling>
> > running build_ext
> > running build_src
> > building extension "sc_d133102ab45193e072f8dbb5a1f6848513" sources
> > customize UnixCCompiler
> > customize UnixCCompiler using build_ext
> > customize UnixCCompiler
> > customize UnixCCompiler using build_ext
> > building 'sc_d133102ab45193e072f8dbb5a1f6848513' extension
> > compiling C++ sources
> > C compiler: g++ -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -
> > Wall -fPIC
> > 
> > compile options: '-I/user/home/gent/vsc401/vsc40157/scipy-runtime/
> > scipy/weave -I/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/
> > weave/scxx -I/user/home/gent/vsc401/vsc40157/numpy-runtime/numpy/core/
> > include -I/apps/gent/gengar/harpertown/software/Python/2.6.2-
> > gimkl-0.5.0/include/python2.6 -c'
> > g++: /user/home/gent/vsc401/vsc40157/.python26_compiled/
> > sc_d133102ab45193e072f8dbb5a1f6848513.cpp
> > g++ -pthread -shared /tmp/vsc40157/python26_intermediate/
> > compiler_c1b5f1b73f1ce7d0c836cdad4c7c5ded/user/home/gent/vsc401/
> > vsc40157/.python26_compiled/sc_d133102ab45193e072f8dbb5a1f6848513.o /
> > tmp/vsc40157/python26_intermediate/
> > compiler_c1b5f1b73f1ce7d0c836cdad4c7c5ded/user/home/gent/vsc401/
> > vsc40157/scipy-runtime/scipy/weave/scxx/weave_imp.o -o /user/home/gent/
> > vsc401/vsc40157/.python26_compiled/
> > sc_d133102ab45193e072f8dbb5a1f6848513.so
> > running scons
> > 
> > --------------------- >> end captured stdout << ----------------------
> > 
> > 
> > ********************** TESTS THAT FAIL ***********************
> > 
> > -bash-3.2$ python ./test_c_spec.py
> > E..........EE.................EEEE......E..........EE.................EEEE..............
> > ======================================================================
> > ERROR: test_call_function (test_c_spec.CallableConverter)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 296, in test_call_function
> >    compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_file_to_py (test_c_spec.FileConverter)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 262, in test_file_to_py
> >    force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_py_to_file (test_c_spec.FileConverter)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 246, in test_py_to_file
> >    inline_tools.inline(code,['file'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_convert_to_dict (test_c_spec.SequenceConverter)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 305, in test_convert_to_dict
> >    inline_tools.inline("",['d'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_convert_to_list (test_c_spec.SequenceConverter)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 309, in test_convert_to_list
> >    inline_tools.inline("",['l'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_convert_to_string (test_c_spec.SequenceConverter)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 313, in test_convert_to_string
> >    inline_tools.inline("",['s'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_convert_to_tuple (test_c_spec.SequenceConverter)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 317, in test_convert_to_tuple
> >    inline_tools.inline("",['t'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_call_function (test_c_spec.TestCallableConverterUnix)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 296, in test_call_function
> >    compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_file_to_py (test_c_spec.TestFileConverterUnix)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 262, in test_file_to_py
> >    force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_py_to_file (test_c_spec.TestFileConverterUnix)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 246, in test_py_to_file
> >    inline_tools.inline(code,['file'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_convert_to_dict (test_c_spec.TestSequenceConverterUnix)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 305, in test_convert_to_dict
> >    inline_tools.inline("",['d'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_convert_to_list (test_c_spec.TestSequenceConverterUnix)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 309, in test_convert_to_list
> >    inline_tools.inline("",['l'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_convert_to_string (test_c_spec.TestSequenceConverterUnix)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 313, in test_convert_to_string
> >    inline_tools.inline("",['s'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ======================================================================
> > ERROR: test_convert_to_tuple (test_c_spec.TestSequenceConverterUnix)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > tests/test_c_spec.py", line 317, in test_convert_to_tuple
> >    inline_tools.inline("",['t'],compiler=self.compiler,force=1)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > inline_tools.py", line 301, in inline
> >    function_catalog.add_function(code,func,module_dir)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 648, in add_function
> >    self.cache[code] = self.get_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 615, in get_functions
> >    function_list = self.get_cataloged_functions(code)
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/weave/
> > catalog.py", line 529, in get_cataloged_functions
> >    if cat is not None and code in cat:
> >  File "/apps/gent/gengar/harpertown/software/Python/2.6.2-gimkl-0.5.0/
> > lib/python2.6/shelve.py", line 110, in __contains__
> >    return key in self.dict
> >  File "/user/home/gent/vsc401/vsc40157/scipy-runtime/scipy/io/
> > dumbdbm_patched.py", line 73, in __getitem__
> >    pos, siz = self._index[key] # may raise KeyError
> > KeyError: 0
> > 
> > ----------------------------------------------------------------------
> > Ran 88 tests in 32.581s
> > 
> > FAILED (errors=14)



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