[SciPy-Dev] Errors in 0.8.x

Charles R Harris charlesr.harris@gmail....
Tue Jun 15 21:27:26 CDT 2010


Hi All,

I get some error in the tests:

======================================================================
ERROR: Failure: ValueError (__builtin__.file does not appear to be the
correct type object)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/pymodules/python2.6/nose/loader.py", line 379, in
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/pymodules/python2.6/nose/importer.py", line 39, in
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/pymodules/python2.6/nose/importer.py", line 86, in
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/local/lib/python2.6/dist-packages/scipy/io/__init__.py", line
75, in <module>
    from matlab.mio import loadmat, savemat
  File "/usr/local/lib/python2.6/dist-packages/scipy/io/matlab/__init__.py",
line 2, in <module>
    from mio import loadmat, savemat
  File "/usr/local/lib/python2.6/dist-packages/scipy/io/matlab/mio.py", line
13, in <module>
    from mio5 import MatFile5Reader, MatFile5Writer
  File "/usr/local/lib/python2.6/dist-packages/scipy/io/matlab/mio5.py",
line 90, in <module>
    from mio5_utils import VarReader5
  File "streams.pxd", line 3, in init scipy.io.matlab.mio5_utils
(scipy/io/matlab/mio5_utils.c:9394)
  File "streams.pyx", line 26, in init scipy.io.matlab.streams
(scipy/io/matlab/streams.c:3394)
ValueError: __builtin__.file does not appear to be the correct type object

======================================================================
ERROR: test_decomp.test_lapack_misaligned(<function solve at 0x3851500>,
(array([[  1.734e-255,   8.189e-217,   4.025e-178,   1.903e-139,
9.344e-101,
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/pymodules/python2.6/nose/case.py", line 183, in runTest
    self.test(*self.arg)
  File
"/usr/local/lib/python2.6/dist-packages/scipy/linalg/tests/test_decomp.py",
line 1118, in check_lapack_misaligned
    func(*a,**kwargs)
  File "/usr/local/lib/python2.6/dist-packages/scipy/linalg/basic.py", line
133, in solve
    a1, b1 = map(asarray_chkfinite,(a,b))
  File "/usr/local/lib/python2.6/dist-packages/numpy/lib/function_base.py",
line 528, in asarray_chkfinite
    "array must not contain infs or NaNs")
ValueError: array must not contain infs or NaNs

======================================================================
ERROR: Ticket #1124.
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/local/lib/python2.6/dist-packages/scipy/signal/tests/test_signaltools.py",
line 287, in test_none
    signal.medfilt(None)
  File "/usr/local/lib/python2.6/dist-packages/scipy/signal/signaltools.py",
line 308, in medfilt
    return sigtools._order_filterND(volume,domain,order)
ValueError: order_filterND not available for this type

----------------------------------------------------------------------
Ran 4007 tests in 39.457s

FAILED (KNOWNFAIL=12, SKIP=29, errors=3)


There are also a lot of compiler warnings like:

gfortran:f77: ./lbfgsb/routines.f
Warning: Nonconforming tab character in column 1 of line 510


Are these things already known?

Chuck
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