[SciPy-Dev] ANN: Numpy 1.6.0 beta 1

Bruce Southey bsouthey@gmail....
Wed Mar 23 16:56:44 CDT 2011


On 03/23/2011 04:51 PM, Derek Homeier wrote:
> On 23 Mar 2011, at 22:08, Derek Homeier wrote:
>
>> I managed work around this by building with
>> mkdir -p build/py3k/numpy/compat
>> PYTHONPATH=%b/build/py3k/numpy/compat %p/bin/python%type_raw[python]
>> setup.py build
>>
>> (%b is a placeholder for the fink build directory), but I suspect
>> that's not the desired
>> way to have the build work, and anyway then the build fails soon
>> afterwards on
>>
>> RefactoringTool: /scratch/fink.build/numpy-py32-1.6.0b1-1/
>> numpy-1.6.0b1/build/py3k/numpy/core/defchararray.py
>> Traceback (most recent call last):
>>    File "setup.py", line 201, in<module>
>>      setup_package()
>>    File "setup.py", line 178, in setup_package
>>      from numpy.distutils.core import setup
>>    File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
>> distutils/core.py", line 25, in<module>
>>      from numpy.distutils.command import config, config_compiler, \
>>    File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
>> distutils/command/build_ext.py", line 16, in<module>
>>      from numpy.distutils.system_info import combine_paths
>>    File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
>> distutils/system_info.py", line 1242
>>      except Exception, msg: # failed to get version from file -- maybe
>> on Windows
>>                      ^
>> SyntaxError: invalid syntax
> As an update; since that exception did not use "msg" I decided to
> comment it out to
> get past that point, only to fail later on, but I am not sure whether
> the failure now is
> due to my tweaking of PYTHONPATH or a refactoring issue (it comes down
> to a
> non-refactored "print" of course, but I am wondering about all the
> path warnings)
>
> Cheers,
> 						Derek
>
> RefactoringTool: /scratch/fink.build/numpy-py32-1.6.0b1-1/
> numpy-1.6.0b1/build/py3k/numpy/core/defchararray.py
> non-existing path in 'numpy/distutils': 'site.cfg'
> F2PY Version 2
> blas_opt_info:
>     FOUND:
>       extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
>       define_macros = [('NO_ATLAS_INFO', 3)]
>       extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/
> vecLib.framework/Headers']
>
> non-existing path in 'numpy/lib': 'benchmarks'
> lapack_opt_info:
> /scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/distutils/
> system_info.py:531: UserWarning: Specified path  is invalid.
>     warnings.warn('Specified path %s is invalid.' % d)
>     FOUND:
>       extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
>       define_macros = [('NO_ATLAS_INFO', 3)]
>       extra_compile_args = ['-msse3']
>
> non-existing path in '': 'doc/cython/'
> non-existing path in '': 'doc/pyrex/'
> non-existing path in '': 'doc/swig/'
> running build
> running config_cc
> unifing config_cc, config, build_clib, build_ext, build commands --
> compiler options
> running config_fc
> unifing config_fc, config, build_clib, build_ext, build commands --
> fcompiler options
> running build_src
> build_src
> building py_modules sources
> creating build
> creating build/src.macosx-10.5-i386-3.2
> creating build/src.macosx-10.5-i386-3.2/numpy
> creating build/src.macosx-10.5-i386-3.2/numpy/distutils
> building library "npymath" sources
> Traceback (most recent call last):
>     File "setup.py", line 201, in<module>
>       setup_package()
>     File "setup.py", line 194, in setup_package
>       configuration=configuration )
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/core.py", line 186, in setup
>       return old_setup(**new_attr)
>     File "/sw/lib/python3.2/distutils/core.py", line 149, in setup
>       dist.run_commands()
>     File "/sw/lib/python3.2/distutils/dist.py", line 919, in run_commands
>       self.run_command(cmd)
>     File "/sw/lib/python3.2/distutils/dist.py", line 938, in run_command
>       cmd_obj.run()
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/command/build.py", line 37, in run
>       old_build.run(self)
>     File "/sw/lib/python3.2/distutils/command/build.py", line 128, in run
>       self.run_command(cmd_name)
>     File "/sw/lib/python3.2/distutils/cmd.py", line 315, in run_command
>       self.distribution.run_command(command)
>     File "/sw/lib/python3.2/distutils/dist.py", line 938, in run_command
>       cmd_obj.run()
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/command/build_src.py", line 152, in run
>       self.build_sources()
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/command/build_src.py", line 163, in build_sources
>       self.build_library_sources(*libname_info)
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/command/build_src.py", line 298, in build_library_sources
>       sources = self.generate_sources(sources, (lib_name, build_info))
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/command/build_src.py", line 385, in generate_sources
>       source = func(extension, build_dir)
>     File "numpy/core/setup.py", line 694, in get_mathlib_info
>       st = config_cmd.try_link('int main(void) { return 0;}')
>     File "/sw/lib/python3.2/distutils/command/config.py", line 245, in
> try_link
>       self._check_compiler()
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/command/config.py", line 75, in _check_compiler
>       c_compiler=self.compiler)
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/fcompiler/__init__.py", line 817, in new_fcompiler
>       load_all_fcompiler_classes()
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/fcompiler/__init__.py", line 728, in
> load_all_fcompiler_classes
>       __import__ (module_name)
>     File "/scratch/fink.build/numpy-py32-1.6.0b1-1/numpy-1.6.0b1/numpy/
> distutils/fcompiler/pathf95.py", line 36
>       print compiler.get_version()
>                    ^
> SyntaxError: invalid syntax
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> http://mail.scipy.org/pipermail/numpy-discussion/2011-March/055601.html
Sorry as I should I have paid more attention to you first email as I 
raised this on the numpy list. (At least with gmail, the reply is to the 
scipy-dev list rather than the numpy list.)

Based on Pauli's answer I got around it by commenting out a line in the 
setup.py file about the git version:
http://mail.scipy.org/pipermail/numpy-discussion/2011-March/055603.html

Bruce


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