[SciPy-Dev] Fwd: scipy.test gives error

akshar bhosale akshar.bhosale@gmail....
Tue Oct 18 11:43:34 CDT 2011


python -c 'import scipy;scipy.test(verbose=10)' gives me :

NumPy version 1.6.0
NumPy is installed in /home/akshar/.local/lib/python2.6/site-packages/numpy
SciPy version 0.9.0
SciPy is installed in /home/akshar/.local/lib/python2.6/site-packages/scipy
Python version 2.6 (r26:66714, May 29 2011, 15:10:47) [GCC 4.1.2 20071124
(Red Hat 4.1.2-42)]
nose version 1.0.0
nose.config: INFO: Excluding tests matching ['f2py_ext', 'f2py_f90_ext',
'gen_ext', 'pyrex_ext', 'swig_ext']
nose.selector: INFO:
/home/akshar/.local/lib/python2.6/site-packages/scipy/fftpack/convolve.so is
executable; skipped
nose.selector: INFO:
/home/akshar/.local/lib/python2.6/site-packages/scipy/integrate/vode.so is
executable; skipped
.
.
.
.
.
Tests maxRstat(Z, R, 1) on linkage and inconsistency matrices with different
numbers of clusters. Expecting exception. ... ok
Tests maxRstat(Z, R, 1) on empty linkage. Expecting exception. ... ok
Tests maxRstat(Z, R, 1) on linkage with one cluster. ... ok
Tests maxRstat(Z, R, 2) on the Q data set using centroid linkage. ... ok
Tests maxRstat(Z, R, 2) on the Q data set using complete linkage. ... ok
Tests maxRstat(Z, R, 2) on the Q data set using median linkage. ... ok
Tests maxRstat(Z, R, 2) on the Q data set using single linkage. ... ok
Tests maxRstat(Z, R, 2) on the Q data set using Ward linkage. ... ok
Tests maxRstat(Z, R, 2) on linkage and inconsistency matrices with different
numbers of clusters. Expecting exception. ... ok
Tests maxRstat(Z, R, 2) on empty linkage. Expecting exception. ... ok
Tests maxRstat(Z, R, 2) on linkage with one cluster. ... ok
Tests maxRstat(Z, R, 3) on the Q data set using centroid linkage. ... ok
Tests maxRstat(Z, R, 3) on the Q data set using complete linkage. ... ok
Tests maxRstat(Z, R, 3) on the Q data set using median linkage. ... ok
Tests maxRstat(Z, R, 3) on the Q data set using single linkage. ... ok
Tests maxRstat(Z, R, 3) on the Q data set using Ward linkage. ... ok
Tests maxRstat(Z, R, 3) on linkage and inconsistency matrices with different
numbers of clusters. Expecting exception. ... ok
Tests maxRstat(Z, R, 3) on empty linkage. Expecting exception. ... ok
Tests maxRstat(Z, R, 3) on linkage with one cluster. ... ok
Tests maxRstat(Z, R, 3.3). Expecting exception. ... ok
Tests maxRstat(Z, R, -1). Expecting exception. ... ok
Tests maxRstat(Z, R, 4). Expecting exception. ... ok
Tests num_obs_linkage(Z) on linkage over 2 observations. ... ok
Tests num_obs_linkage(Z) on linkage over 3 observations. ... ok
Tests num_obs_linkage(Z) on linkage on observation sets between sizes 4 and
15 (step size 3). ... ok
Tests num_obs_linkage(Z) with empty linkage. ... ok
Tests to_mlab_linkage on linkage array with multiple rows. ... ok
Tests to_mlab_linkage on empty linkage array. ... ok
Tests to_mlab_linkage on linkage array with single row. ... ok
test_hierarchy.load_testing_files ... ok
Ticket #505. ... ok
Testing that kmeans2 init methods work. ... MKL FATAL ERROR: Cannot load
libmkl_lapack.so


---------- Forwarded message ----------
From: akshar bhosale <akshar.bhosale@gmail.com>
Date: Tue, Oct 18, 2011 at 7:51 PM
Subject: Fwd: scipy.test gives error
To: scipy-dev@scipy.org




On Tue, Oct 18, 2011 at 12:23 PM, akshar bhosale
<akshar.bhosale@gmail.com>wrote:

>
>
> ---------- Forwarded message ----------
> From: akshar bhosale <akshar.bhosale@gmail.com>
> Date: Mon, Oct 17, 2011 at 11:26 PM
> Subject: scipy.test gives error
> To: scipy-user@scipy.org, scipy-dev-owner@scipy.org
>
>
> Hi,
> scipy.test gives following error :
> MKL FATAL ERROR : can not load libmkl_lapack.so
> import numpy;import scipy does not throw any error.
> This library is present in the LD_LIBARY_PATH.
> What can be the issue?
> These modules were installed few days back and used to work.
>
> -Aksharb
>
>
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