[Scipy-svn] r5562 - in trunk/scipy/stats: . tests

scipy-svn@scip... scipy-svn@scip...
Wed Feb 18 20:58:26 CST 2009


Author: josef
Date: 2009-02-18 20:58:23 -0600 (Wed, 18 Feb 2009)
New Revision: 5562

Modified:
   trunk/scipy/stats/stats.py
   trunk/scipy/stats/tests/test_stats.py
Log:
fix describe, was broken with removal of stats.var; also min, max didn't have axis argument

Modified: trunk/scipy/stats/stats.py
===================================================================
--- trunk/scipy/stats/stats.py	2009-02-18 22:45:36 UTC (rev 5561)
+++ trunk/scipy/stats/stats.py	2009-02-19 02:58:23 UTC (rev 5562)
@@ -836,9 +836,10 @@
     """
     a, axis = _chk_asarray(a, axis)
     n = a.shape[axis]
-    mm = (np.minimum.reduce(a), np.maximum.reduce(a))
-    m = mean(a, axis)
-    v = var(a, axis)
+    #mm = (np.minimum.reduce(a), np.maximum.reduce(a))
+    mm = (np.min(a, axis=axis), np.max(a, axis=axis))
+    m = np.mean(a, axis=axis)
+    v = np.var(a, axis=axis, ddof=1)
     sk = skew(a, axis)
     kurt = kurtosis(a, axis)
     return n, mm, m, v, sk, kurt

Modified: trunk/scipy/stats/tests/test_stats.py
===================================================================
--- trunk/scipy/stats/tests/test_stats.py	2009-02-18 22:45:36 UTC (rev 5561)
+++ trunk/scipy/stats/tests/test_stats.py	2009-02-19 02:58:23 UTC (rev 5562)
@@ -1217,7 +1217,31 @@
     anan = np.array([[1,np.nan],[-1,1]])
     assert_equal(stats.ttest_1samp(anan, 0),([0, np.nan], [1,np.nan]))
 
+def test_describe():
+    x = np.vstack((np.ones((3,4)),2*np.ones((2,4))))
+    nc, mmc = (5, ([ 1.,  1.,  1.,  1.], [ 2.,  2.,  2.,  2.]))
+    mc = np.array([ 1.4,  1.4,  1.4,  1.4])
+    vc = np.array([ 0.3,  0.3,  0.3,  0.3])
+    skc = [0.40824829046386357]*4
+    kurtc = [-1.833333333333333]*4
+    n, mm, m, v, sk, kurt = stats.describe(x)
+    assert_equal(n, nc)
+    assert_equal(mm, mmc)
+    assert_equal(m, mc)
+    assert_equal(v, vc)
+    assert_array_almost_equal(sk, skc, decimal=13) #not sure about precision
+    assert_array_almost_equal(kurt, kurtc, decimal=13)
+    n, mm, m, v, sk, kurt = stats.describe(x.T, axis=1)
+    assert_equal(n, nc)
+    assert_equal(mm, mmc)
+    assert_equal(m, mc)
+    assert_equal(v, vc)
+    assert_array_almost_equal(sk, skc, decimal=13) #not sure about precision
+    assert_array_almost_equal(kurt, kurtc, decimal=13)
 
 
+
+
+
 if __name__ == "__main__":
     run_module_suite()



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