[Scipy-tickets] [SciPy] #1601: Bento build - Test errors

SciPy Trac scipy-tickets@scipy....
Mon Feb 20 14:00:51 CST 2012


#1601: Bento build - Test errors
---------------------------+------------------------------------------------
 Reporter:  ScottSinclair  |       Owner:  cdavid
     Type:  defect         |      Status:  new   
 Priority:  normal         |   Milestone:  0.11.0
Component:  Build issues   |     Version:  devel 
 Keywords:  bento, waf     |  
---------------------------+------------------------------------------------
Changes (by rgommers):

  * milestone:  Unscheduled => 0.11.0


Old description:

> When scipy has been built with Bento/waf there are several test
> failures related to undefined Fortran symbols (see an example below).
> Pauli thinks it's related to library link order (see discussion at
> https://github.com/scipy/scipy/pull/158).
>
> See also mailing list discussion at http://mail.scipy.org/pipermail
> /scipy-dev/2012-February/017144.html
>
> ERROR: Failure: ImportError
> (/home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7/site-
> packages/scipy/special/_cephes.so:
> undefined symbol: _gfortran_transfer_character_write)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>  File "/home/scott/.local/lib/python2.7/site-packages/nose/loader.py",
> line 390, in loadTestsFromName
>    addr.filename, addr.module)
>  File "/home/scott/.local/lib/python2.7/site-packages/nose/importer.py",
> line 39, in importFromPath
>    return self.importFromDir(dir_path, fqname)
>  File "/home/scott/.local/lib/python2.7/site-packages/nose/importer.py",
> line 86, in importFromDir
>    mod = load_module(part_fqname, fh, filename, desc)
>  File "/home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7/site-
> packages/scipy/integrate/__init__.py",
> line 50, in <module>
>    from quadrature import *
>  File "/home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7/site-
> packages/scipy/integrate/quadrature.py",
> line 5, in <module>
>    from scipy.special.orthogonal import p_roots
>  File "/home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7/site-
> packages/scipy/special/__init__.py",
> line 525, in <module>
>    from _cephes import *
> ImportError: /home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7
> /site-packages/scipy/special/_cephes.so:
> undefined symbol: _gfortran_transfer_character_write

New description:

 When scipy has been built with Bento/waf there are several test
 failures related to undefined Fortran symbols (see an example below).
 Pauli thinks it's related to library link order (see discussion at
 https://github.com/scipy/scipy/pull/158).

 See also mailing list discussion at http://mail.scipy.org/pipermail/scipy-
 dev/2012-February/017144.html
 {{{
 ERROR: Failure: ImportError
 (/home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7/site-
 packages/scipy/special/_cephes.so:
 undefined symbol: _gfortran_transfer_character_write)
 ----------------------------------------------------------------------
 Traceback (most recent call last):
  File "/home/scott/.local/lib/python2.7/site-packages/nose/loader.py",
 line 390, in loadTestsFromName
    addr.filename, addr.module)
  File "/home/scott/.local/lib/python2.7/site-packages/nose/importer.py",
 line 39, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/home/scott/.local/lib/python2.7/site-packages/nose/importer.py",
 line 86, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7/site-
 packages/scipy/integrate/__init__.py",
 line 50, in <module>
    from quadrature import *
  File "/home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7/site-
 packages/scipy/integrate/quadrature.py",
 line 5, in <module>
    from scipy.special.orthogonal import p_roots
  File "/home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7/site-
 packages/scipy/special/__init__.py",
 line 525, in <module>
    from _cephes import *
 ImportError: /home/scott/.virtualenvs/scipy-sandbox/local/lib/python2.7
 /site-packages/scipy/special/_cephes.so:
 undefined symbol: _gfortran_transfer_character_write
 }}}

--

Comment:

 <reformat description>

-- 
Ticket URL: <http://projects.scipy.org/scipy/ticket/1601#comment:1>
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