[SciPy-user] MDP 1.0.0 and symeig 1.0 released

Nils Wagner nwagner at mecha.uni-stuttgart.de
Tue Nov 16 04:24:47 CST 2004


p.berkes at biologie.hu-berlin.de wrote:

>Hi,
>
>Tiziano and I are pleased to announce a new release of the
>
> Modular toolkit for Data Processing (MDP) 1.0.0
> (http://mdp-toolkit.sourceforge.net)
>
>MDP is a Python library based on SciPy to implement data processing
>elements (nodes) and combine them into data processing sequences
>(flows). Already implemented nodes include Principal Component
>Analysis (PCA), Independent Component Analysis (ICA), Slow Feature
>Analysis (SFA), and Growing Neural Gas.
>
>In the past there has been some interest on the scipy-user mailing
>list concerning the MDP function 'symeig' to solve the standard and
>generalized eigenvalue problems for symmetric (hermitian) positive
>definite matrices:
>
>http://www.scipy.org/mailinglists/mailman?fn=scipy-user/2004-September/003241.html
>http://www.scipy.org/mailinglists/mailman?fn=scipy-user/2004-October/003391.html
>http://www.scipy.org/mailinglists/mailman?fn=scipy-user/2004-October/003396.html
>
>This function has been improved in the new release. In particular, it
>now correctly handles complex matrices (there seems to be something
>wrong with the LAPACK documentation in the complex case). 'symeig' is
>now distributed also as an independent package:
>
>http://mdp-toolkit.sourceforge.net/symeig.html
>
>Since the LAPACK functions wrapped by 'symeig' seem to be of general
>interest, you might want to consider including it in SciPy. The
>distribution includes the .pyf file used to generate the wrappers, the
>symeig function itself, and a test suite. Tiziano and I are ready to
>help with the inclusion process if needed. 'symeig' is currently released
>under LGPL, but we might change the licence if it conflicts with
>that of SciPy.
>
>Best Regards,
>Pietro Berkes and Tiziano Zito
>
>----------------------------------------
>{p.berkes, t.zito}@biologie.hu-berlin.de
>Institute for Theoretical Biology
>Humboldt University
>Invalidenstrasse 43
>D-10115 Berlin, Germany
>----------------------------------------
>
>_______________________________________________
>SciPy-user mailing list
>SciPy-user at scipy.net
>http://www.scipy.net/mailman/listinfo/scipy-user
>  
>

 I tried to install symeig.
python setup.py install failed

build/src/froutinesmodule.c: In function `f2py_rout_froutines_ssyevr':
build/src/froutinesmodule.c:325: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:325: error: (Each undeclared identifier is 
reported only once
build/src/froutinesmodule.c:325: error: for each function it appears in.)
build/src/froutinesmodule.c:331: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:354: error: `A' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_dsyevr':
build/src/froutinesmodule.c:583: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:589: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:612: error: `A' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_cheevr':
build/src/froutinesmodule.c:855: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:861: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:876: error: `A' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_zheevr':
build/src/froutinesmodule.c:1134: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1140: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1155: error: `A' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_ssygv':
build/src/froutinesmodule.c:1390: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1394: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_dsygv':
build/src/froutinesmodule.c:1575: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1579: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_chegv':
build/src/froutinesmodule.c:1765: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1769: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_zhegv':
build/src/froutinesmodule.c:1967: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1971: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_ssygvd':
build/src/froutinesmodule.c:2170: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:2174: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_dsygvd':
build/src/froutinesmodule.c:2376: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:2380: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_chegvd':
build/src/froutinesmodule.c:2579: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:2583: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_zhegvd':
build/src/froutinesmodule.c:2806: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:2810: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_ssygvx':
build/src/froutinesmodule.c:3057: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3075: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3079: error: `I' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_dsygvx':
build/src/froutinesmodule.c:3342: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3360: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3364: error: `I' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_chegvx':
build/src/froutinesmodule.c:3627: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3636: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3654: error: `I' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_zhegvx':
build/src/froutinesmodule.c:3929: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3938: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3956: error: `I' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_ssyevr':
build/src/froutinesmodule.c:325: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:325: error: (Each undeclared identifier is 
reported only once
build/src/froutinesmodule.c:325: error: for each function it appears in.)
build/src/froutinesmodule.c:331: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:354: error: `A' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_dsyevr':
build/src/froutinesmodule.c:583: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:589: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:612: error: `A' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_cheevr':
build/src/froutinesmodule.c:855: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:861: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:876: error: `A' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_zheevr':
build/src/froutinesmodule.c:1134: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1140: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1155: error: `A' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_ssygv':
build/src/froutinesmodule.c:1390: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1394: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_dsygv':
build/src/froutinesmodule.c:1575: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1579: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_chegv':
build/src/froutinesmodule.c:1765: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1769: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_zhegv':
build/src/froutinesmodule.c:1967: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:1971: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_ssygvd':
build/src/froutinesmodule.c:2170: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:2174: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_dsygvd':
build/src/froutinesmodule.c:2376: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:2380: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_chegvd':
build/src/froutinesmodule.c:2579: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:2583: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_zhegvd':
build/src/froutinesmodule.c:2806: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:2810: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_ssygvx':
build/src/froutinesmodule.c:3057: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3075: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3079: error: `I' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_dsygvx':
build/src/froutinesmodule.c:3342: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3360: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3364: error: `I' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_chegvx':
build/src/froutinesmodule.c:3627: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3636: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3654: error: `I' undeclared (first use in 
this function)
build/src/froutinesmodule.c: In function `f2py_rout_froutines_zhegvx':
build/src/froutinesmodule.c:3929: error: `U' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3938: error: `V' undeclared (first use in 
this function)
build/src/froutinesmodule.c:3956: error: `I' undeclared (first use in 
this function)
error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG 
-D_FILE_OFFSET_BITS=64 -DHAVE_LARGEFILE_SUPPORT -O2 -march=i586 
-mcpu=i686 -fmessage-length=0 -Wall -fPIC -DATLAS_INFO="\"3.7.8\"" 
-I/usr/local/lib/atlas -Ibuild/src -I/usr/include/python2.3 -c 
build/src/froutinesmodule.c -o 
build/temp.linux-i686-2.3/build/src/froutinesmodule.o" failed with exit 
status 1

Nils




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