[SciPy-user] scipy.test() fail

Ramon Crehuet rcsqtc at iiqab.csic.es
Wed Aug 31 05:24:49 CDT 2005


Dear all,
    I have downloaded and installed Scipy but I get a problem running 
the tests. After a long output I get:

 >>>import scipy
 >>>scipy.test()
.
.
.
Don't worry about a warning regarding the number of bytes read.
Warning: 1000000 bytes requested, 20 bytes read.
.........................................................................................................................................../usr/lib/python2.3/site-packages/scipy/interpolate/fitpack2.py:412: 
UserWarning:
The coefficients of the spline returned have been computed as the
minimal norm least-squares solution of a (numerically) rank deficient
system (deficiency=7). If deficiency is large, the results may be
inaccurate. Deficiency may strongly depend on the value of eps.
  warnings.warn(message)
...................Illegal instruction

And I am returned to the shell. This is the output from system_info.py


_pkg_config_info:
  NOT AVAILABLE

agg2_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

atlas_blas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/ATLAS )
( paths: /usr/lib/libf77blas.a )
( paths: /usr/lib/libcblas.a )
( paths: /usr/lib/libatlas.a )
( paths: /usr/lib/ATLAS )
system_info.atlas_blas_info
( include_dirs = /usr/local/include:/usr/include )
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c

atlas_blas_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/ATLAS )
( paths: /usr/lib/libatlas.a )
system_info.atlas_blas_threads_info
  NOT AVAILABLE

atlas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/ATLAS )
( paths: /usr/lib/libf77blas.a )
( paths: /usr/lib/libcblas.a )
( paths: /usr/lib/libatlas.a )
( paths: /usr/lib/ATLAS )
( paths: /usr/lib/liblapack.so )
system_info.atlas_info
( include_dirs = /usr/local/include:/usr/include )
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77

atlas_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/ATLAS )
( paths: /usr/lib/libatlas.a )
system_info.atlas_threads_info
  NOT AVAILABLE

blas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/libblas.so )
  FOUND:
    libraries = ['blas']
    library_dirs = ['/usr/lib']
    language = f77

blas_opt_info:
running build_src
building extension "atlas_version" sources
creating build
creating build/src
  adding 'build/src/atlas_version_0x375d48b1.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'atlas_version' extension
compiling C sources
gcc options: '-pthread -fno-strict-aliasing -DNDEBUG -O2 
-fomit-frame-pointer -pipe -march=i586 -mcpu=pentiumpro -g -fPIC'
creating build/temp.linux-i686-2.3
creating build/temp.linux-i686-2.3/build
creating build/temp.linux-i686-2.3/build/src
compile options: '-I/usr/include/python2.3 -c'
gcc: build/src/atlas_version_0x375d48b1.c
gcc -pthread -shared 
build/temp.linux-i686-2.3/build/src/atlas_version_0x375d48b1.o 
-L/usr/lib -latlas -o build/temp.linux-i686-2.3/atlas_version.so
/usr/lib/python2.3/site-packages/scipy_distutils/system_info.py:812: 
FutureWarning: hex()/oct() of negative int will return a signed string 
in Python 2.4 and up
  magic = hex(hash(`config`))
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c
    define_macros = [('ATLAS_INFO', '"\\"3.6.0\\""')]

blas_src_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

boost_python_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

dfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

dfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

djbfft_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

fftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

fftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

freetype2_info:
  NOT AVAILABLE

gdk_2_info:
  FOUND:
    libraries = ['gdk-x11-2.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 
'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_2_INFO', '"\\"2.2.4\\""'), 
('GDK_VERSION_2_2_4', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/include/pango-1.0', '/usr/X11R6/include', 
'/usr/include/freetype2', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gdk_info:
  FOUND:
    libraries = ['gdk', 'Xi', 'Xext', 'X11', 'm', 'glib']
    library_dirs = ['/usr/X11R6/lib']
    define_macros = [('GDK_INFO', '"\\"1.2.10\\""'), 
('GDK_VERSION_1_2_10', None)]
    include_dirs = ['/usr/include/gtk-1.2', '/usr/X11R6/include', 
'/usr/include/glib-1.2', '/usr/lib/glib/include']

gdk_pixbuf_2_info:
  FOUND:
    libraries = ['gdk_pixbuf-2.0', 'm', 'gobject-2.0', 'gmodule-2.0', 
'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_PIXBUF_2_INFO', '"\\"2.2.4\\""'), 
('GDK_PIXBUF_VERSION_2_2_4', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gdk_pixbuf_xlib_2_info:
  FOUND:
    libraries = ['gdk_pixbuf_xlib-2.0', 'gdk_pixbuf-2.0', 'm', 
'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_PIXBUF_XLIB_2_INFO', '"\\"2.2.4\\""'), 
('GDK_PIXBUF_XLIB_VERSION_2_2_4', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gdk_x11_2_info:
  FOUND:
    libraries = ['gdk-x11-2.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 
'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_X11_2_INFO', '"\\"2.2.4\\""'), 
('GDK_X11_VERSION_2_2_4', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/include/pango-1.0', '/usr/X11R6/include', 
'/usr/include/freetype2', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gtkp_2_info:
  FOUND:
    libraries = ['gtk-x11-2.0', 'gdk-x11-2.0', 'atk-1.0', 
'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 
'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GTKP_2_INFO', '"\\"2.2.4\\""'), 
('GTK_VERSION_2_2_4', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/include/atk-1.0', '/usr/include/pango-1.0', '/usr/X11R6/include', 
'/usr/include/freetype2', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gtkp_x11_2_info:
  FOUND:
    libraries = ['gtk-x11-2.0', 'gdk-x11-2.0', 'atk-1.0', 
'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 
'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GTKP_X11_2_INFO', '"\\"2.2.4\\""'), 
('GTK_X11_VERSION_2_2_4', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/include/atk-1.0', '/usr/include/pango-1.0', '/usr/X11R6/include', 
'/usr/include/freetype2', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

lapack_atlas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/ATLAS )
( paths: /usr/lib/libf77blas.a )
( paths: /usr/lib/libcblas.a )
( paths: /usr/lib/libatlas.a )
system_info.lapack_atlas_info
  NOT AVAILABLE

lapack_atlas_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/ATLAS )
( paths: /usr/lib/libatlas.a )
system_info.lapack_atlas_threads_info
  NOT AVAILABLE

lapack_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
  FOUND:
    libraries = ['lapack']
    library_dirs = ['/usr/lib']
    language = f77

lapack_opt_info:
running build_src
building extension "atlas_version" sources
  adding 'build/src/atlas_version_0xf2e16eb0.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize GnuFCompiler
customize GnuFCompiler
customize GnuFCompiler using build_ext
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    define_macros = [('ATLAS_INFO', '"\\"3.6.0\\""')]

lapack_src_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

numarray_info:
  NOT AVAILABLE

numpy_info:
( include_dirs = /usr/include/python2.3 )
( paths: /usr/include/python2.3/Numeric/arrayobject.h )
  FOUND:
    define_macros = [('NUMERIC_VERSION', '"\\"23.8\\""')]
    include_dirs = ['/usr/include/python2.3']

sfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

sfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
  NOT AVAILABLE

wx_info:
  FOUND:
    libraries = ['wx_gtk2-2.4']
    extra_link_args = ['-pthread']
    library_dirs = ['/usr/X11R6/lib']
    define_macros = [('WX_INFO', '"\\"2.4.2\\""'), ('WX_VERSION_2_4_2', 
None), ('WX_RELEASE_2_4', None), ('GTK_NO_CHECK_CASTS', None), 
('__WXGTK__', None), ('_FILE_OFFSET_BITS', '64'), ('_LARGE_FILES', None)]
    include_dirs = ['/usr/lib/wx/include/gtk2-2.4']

x11_info:
( library_dirs = /usr/X11R6/lib:/usr/lib )
( include_dirs = /usr/X11R6/include:/usr/include )
( paths: /usr/X11R6/lib/libX11.so )
( paths: /usr/X11R6/include/X11/X.h )
  FOUND:
    libraries = ['X11']
    library_dirs = ['/usr/X11R6/lib']
    include_dirs = ['/usr/X11R6/include']

xft_info:
  FOUND:
    libraries = ['Xft', 'X11', 'freetype', 'Xrender', 'fontconfig']
    library_dirs = ['/usr/X11R6/lib']
    define_macros = [('XFT_INFO', '"\\"2.1.2\\""'), 
('XFT_VERSION_2_1_2', None)]
    include_dirs = ['/usr/X11R6/include', '/usr/include/freetype2']

Does anybody have an idea of what is going on?
Thanks,
Ramon






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