[SciPy-user] Error while installing Scipy

Rahul Kanwar rahul.kanwar at gmail.com
Fri Apr 7 15:12:24 CDT 2006


Thanks for your reply. I did use the --fcompiler flag. Here is the
command line I am using to build scipy.
 python setup.py config_fc --fcompiler=intel build

here is what i get when i do

 python setup.py config_fc --fcompiler=intel config
------------------------------------------------------------------
fft_opt_info:
fftw3_info:
/usr/local/lib64/python2.4/site-packages/numpy/distutils/system_info.py:531:
UserWarning: Library error: libs=['fftw3'] found_libs=[]
  warnings.warn("Library error: libs=%s found_libs=%s" % \
  fftw3 not found
  NOT AVAILABLE

fftw2_info:
/usr/local/lib64/python2.4/site-packages/numpy/distutils/system_info.py:531:
UserWarning: Library error: libs=['rfftw', 'fftw'] found_libs=[] 
warnings.warn("Library error: libs=%s found_libs=%s" % \
  FOUND:
    libraries = ['rfftw', 'fftw']
    library_dirs = ['/opt/fft2/lib']
    define_macros = [('SCIPY_FFTW_H', None)]
    include_dirs = ['/opt/fft2/include']

djbfft_info:
  NOT AVAILABLE

  FOUND:
    libraries = ['rfftw', 'fftw']
    library_dirs = ['/opt/fft2/lib']
    define_macros = [('SCIPY_FFTW_H', None)]
    include_dirs = ['/opt/fft2/include']

blas_opt_info:
blas_mkl_info:
  FOUND:
    libraries = ['mkl', 'vml', 'guide', 'pthread']
    library_dirs = ['/opt/intel/mkl/8.0.2/lib/em64t']
    include_dirs = ['/opt/intel/mkl/8.0.2/include']

  FOUND:
    libraries = ['mkl', 'vml', 'guide', 'pthread']
    library_dirs = ['/opt/intel/mkl/8.0.2/lib/em64t']
    include_dirs = ['/opt/intel/mkl/8.0.2/include']

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  FOUND:
    libraries = ['mkl', 'vml', 'guide', 'pthread']
    library_dirs = ['/opt/intel/mkl/8.0.2/lib/em64t']
    include_dirs = ['/opt/intel/mkl/8.0.2/include']

  FOUND:
    libraries = ['mkl_lapack64', 'mkl', 'vml', 'guide', 'pthread']
    library_dirs = ['/opt/intel/mkl/8.0.2/lib/em64t']
    include_dirs = ['/opt/intel/mkl/8.0.2/include']

  FOUND:
    libraries = ['mkl_lapack64', 'mkl', 'vml', 'guide', 'pthread']
    library_dirs = ['/opt/intel/mkl/8.0.2/lib/em64t']
    include_dirs = ['/opt/intel/mkl/8.0.2/include']

Warning: not existing path in Lib/maxentropy: doc
scipy version 0.4.8
running config_fc
running config
-------------------------------------------------------------------------
  I am using the 64 bit ifort compiler. I used the same options to
build numpy and it was sucessfully created. Plus numpy passed all the
tests inside the python interpreter. but i still keep getting the
error when i compile scipy.

regards,
Rahul

On 4/6/06, Robert Kern <robert.kern at gmail.com> wrote:
> Rahul Kanwar wrote:
> > Hello,
> >    I am working on 64 bit Xeon machine running Suse 10. I am using
> > Intel's MKL and ifort for compiling Numpy and Scipy.
> >    I succesfuly compiled Numpy using this combination and was able to
> > load it in the python interpreter. But i get errors while compiling
> > Scipy, here is what i am getting:
> >
> > ---------------------------------------------------------------
> > ifort: Command line warning: ignoring unknown option '-fno-second-underscore'
> > ifort: Command line warning: overriding '-O3' with '-O2'
> > ifort:f77: Lib/integrate/odepack/cfode.f
> > ifort: Command line warning: ignoring option '-W'; no argument required
> > ifort: Command line warning: ignoring unknown option '-fno-second-underscore'
> > ifort: Command line warning: overriding '-O3' with '-O2'
> > ifort:f77: Lib/integrate/odepack/iprep.f
> > ifort: Command line warning: ignoring option '-W'; no argument required
> > ifort: Command line warning: ignoring unknown option '-fno-second-underscore'
> > ifort: Command line warning: overriding '-O3' with '-O2'
> > ifort:f77: Lib/integrate/odepack/prepj.f
> > ifort: Command line warning: ignoring option '-W'; no argument required
> > ifort: Command line warning: ignoring unknown option '-fno-second-underscore'
> > ifort: Command line warning: overriding '-O3' with '-O2'
> > ar: adding 50 object files to build/temp.linux-x86_64-2.4/libodepack.a
> > ar: adding 9 object files to build/temp.linux-x86_64-2.4/libodepack.a
> > running build_ext
> > customize UnixCCompiler
> > customize UnixCCompiler using build_ext
> > customize GnuFCompiler
> > customize IntelFCompiler
> > customize LaheyFCompiler
> > customize PGroupFCompiler
> > customize AbsoftFCompiler
> > customize NAGFCompiler
> > customize VastFCompiler
> > customize GnuFCompiler
> > customize CompaqFCompiler
> > customize IntelItaniumFCompiler
> > customize Gnu95FCompiler
> > customize G95FCompiler
> > customize GnuFCompiler
> > customize Gnu95FCompiler
> > warning: build_ext: fcompiler=gnu is not available.
>
> What was the command-line that you used? It appears that you did not set
> --fcompiler=intel on the build_ext command.
>
> --
> Robert Kern
> robert.kern at gmail.com
>
> "I have come to believe that the whole world is an enigma, a harmless enigma
>  that is made terrible by our own mad attempt to interpret it as though it had
>  an underlying truth."
>   -- Umberto Eco
>
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> SciPy-user at scipy.net
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