[SciPy-user] Installation Problems on Mac OS X

R. Padraic Springuel R.Springuel at umit.maine.edu
Wed Oct 11 16:23:46 CDT 2006


Okay, I've followed the instructions in the Wiki, but I'm still unable 
to install scipy-0.5.1 on my new Mac.  I've included the full output of 
what happens when I try below.  Can anyone tell me what I'm doing wrong?

$ python setup.py install

fft_opt_info:
fftw3_info:
   libraries fftw3 not found in 
/Library/Frameworks/Python.framework/Versions/2.5/lib
   FOUND:
     libraries = ['fftw3']
     library_dirs = ['/usr/local/lib']
     define_macros = [('SCIPY_FFTW3_H', None)]
     include_dirs = ['/usr/local/include']

djbfft_info:
   NOT AVAILABLE

   FOUND:
     libraries = ['fftw3']
     library_dirs = ['/usr/local/lib']
     define_macros = [('SCIPY_FFTW3_H', None)]
     include_dirs = ['/usr/local/include']

blas_opt_info:
   FOUND:
     extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
     define_macros = [('NO_ATLAS_INFO', 3)]
     extra_compile_args = ['-faltivec', 
'-I/System/Library/Frameworks/vecLib.framework/Headers']

lapack_opt_info:
   FOUND:
     extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
     define_macros = [('NO_ATLAS_INFO', 3)]
     extra_compile_args = ['-faltivec']

non-existing path in 'Lib/linsolve': 'tests'
umfpack_info:
   libraries umfpack not found in 
/Library/Frameworks/Python.framework/Versions/2.5/lib
   libraries umfpack not found in /usr/local/lib
   libraries umfpack not found in /usr/lib
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/distutils/system_info.py:401: 
UserWarning:
     UMFPACK sparse solver 
(http://www.cise.ufl.edu/research/sparse/umfpack/)
     not found. Directories to search for the libraries can be specified 
in the
     numpy/distutils/site.cfg file (section [umfpack]) or by setting
     the UMFPACK environment variable.
   warnings.warn(self.notfounderror.__doc__)
   NOT AVAILABLE

non-existing path in 'Lib/maxentropy': 'doc'
Warning: Subpackage 'Lib' configuration returned as 'scipy'
running install
running build
running config_fc
running build_src
building py_modules sources
building library "dfftpack" sources
building library "linpack_lite" sources
building library "mach" sources
building library "quadpack" sources
building library "odepack" sources
building library "fitpack" sources
building library "superlu_src" sources
building library "minpack" sources
building library "rootfind" sources
building library "c_misc" sources
building library "cephes" sources
building library "mach" sources
building library "toms" sources
building library "amos" sources
building library "cdf" sources
building library "specfun" sources
building library "statlib" sources
building extension "scipy.cluster._vq" sources
building extension "scipy.fftpack._fftpack" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.fftpack.convolve" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.integrate._quadpack" sources
building extension "scipy.integrate._odepack" sources
building extension "scipy.integrate.vode" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.interpolate._fitpack" sources
building extension "scipy.interpolate.dfitpack" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
   adding 
'build/src.macosx-10.3-fat-2.5/Lib/interpolate/dfitpack-f2pywrappers.f' 
to sources.
building extension "scipy.io.numpyio" sources
building extension "scipy.lib.blas.fblas" sources
f2py options: ['skip:', ':']
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
   adding 
'build/src.macosx-10.3-fat-2.5/build/src.macosx-10.3-fat-2.5/Lib/lib/blas/fblas-f2pywrappers.f' 
to sources.
building extension "scipy.lib.blas.cblas" sources
   adding 'build/src.macosx-10.3-fat-2.5/scipy/lib/blas/cblas.pyf' to 
sources.
f2py options: ['skip:', ':']
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.lib.lapack.flapack" sources
f2py options: ['skip:', ':']
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.lib.lapack.clapack" sources
   adding 'build/src.macosx-10.3-fat-2.5/scipy/lib/lapack/clapack.pyf' 
to sources.
f2py options: ['skip:', ':']
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.lib.lapack.calc_lwork" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.lib.lapack.atlas_version" sources
building extension "scipy.linalg.fblas" sources
   adding 'build/src.macosx-10.3-fat-2.5/scipy/linalg/fblas.pyf' to sources.
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
   adding 
'build/src.macosx-10.3-fat-2.5/build/src.macosx-10.3-fat-2.5/scipy/linalg/fblas-f2pywrappers.f' 
to sources.
building extension "scipy.linalg.cblas" sources
   adding 'build/src.macosx-10.3-fat-2.5/scipy/linalg/cblas.pyf' to sources.
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.linalg.flapack" sources
   adding 'build/src.macosx-10.3-fat-2.5/scipy/linalg/flapack.pyf' to 
sources.
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
   adding 
'build/src.macosx-10.3-fat-2.5/build/src.macosx-10.3-fat-2.5/scipy/linalg/flapack-f2pywrappers.f' 
to sources.
building extension "scipy.linalg.clapack" sources
   adding 'build/src.macosx-10.3-fat-2.5/scipy/linalg/clapack.pyf' to 
sources.
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.linalg._flinalg" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.linalg.calc_lwork" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.linalg.atlas_version" sources
building extension "scipy.linalg._iterative" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.linsolve._zsuperlu" sources
building extension "scipy.linsolve._dsuperlu" sources
building extension "scipy.linsolve._csuperlu" sources
building extension "scipy.linsolve._ssuperlu" sources
building extension "scipy.linsolve.umfpack.__umfpack" sources
building extension "scipy.optimize._minpack" sources
building extension "scipy.optimize._zeros" sources
building extension "scipy.optimize._lbfgsb" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.optimize.moduleTNC" sources
building extension "scipy.optimize._cobyla" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.optimize.minpack2" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.signal.sigtools" sources
building extension "scipy.signal.spline" sources
building extension "scipy.sparse.sparsetools" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.special._cephes" sources
building extension "scipy.special.specfun" sources
f2py options: ['--no-wrap-functions']
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.stats.statlib" sources
f2py options: ['--no-wrap-functions']
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.stats.futil" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
building extension "scipy.stats.mvn" sources
f2py options: []
   adding 'build/src.macosx-10.3-fat-2.5/fortranobject.c' to sources.
   adding 'build/src.macosx-10.3-fat-2.5' to include_dirs.
   adding 'build/src.macosx-10.3-fat-2.5/Lib/stats/mvn-f2pywrappers.f' 
to sources.
building extension "scipy.ndimage._nd_image" sources
building data_files sources
running build_py
copying build/src.macosx-10.3-fat-2.5/scipy/__config__.py -> 
build/lib.macosx-10.3-fat-2.5/scipy
running build_clib
customize UnixCCompiler
customize UnixCCompiler using build_clib
customize NAGFCompiler
customize AbsoftFCompiler
customize IbmFCompiler
Could not locate executable g77
Could not locate executable f77
Could not locate executable gfortran
Could not locate executable f95
customize GnuFCompiler
customize Gnu95FCompiler
customize G95FCompiler
customize GnuFCompiler
customize Gnu95FCompiler
customize NAGFCompiler
customize NAGFCompiler using build_clib
building 'dfftpack' library
compiling Fortran sources
Fortran f77 compiler: f95 -fixed -O4 -target=native
Fortran f90 compiler: f95 -O4 -target=native
Fortran fix compiler: f95 -fixed -O4 -target=native
compile options: '-c'
f95:f77: Lib/fftpack/dfftpack/dcosqb.f
sh: line 1: f95: command not found
sh: line 1: f95: command not found
error: Command "f95 -fixed -O4 -target=native -c -c 
Lib/fftpack/dfftpack/dcosqb.f -o 
build/temp.macosx-10.3-fat-2.5/Lib/fftpack/dfftpack/dcosqb.o" failed 
with exit status 127
-- 

R. Padraic Springuel
Teaching Assistant
Department of Physics and Astronomy
University of Maine
Bennett 309
Office Hours: Wednesday 2-3pm


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