[SciPy-user] warnings+errors(check_integer) with scipy.test() on scipy-0.5.1

sam n samnemo at gmail.com
Thu Oct 12 22:41:22 CDT 2006


Hi All,

I just built and installed numpy-1.0rc2 and scipy-0.5.1 and encountered the
warnings & errors below (only get errors from scipy.test() , no problems
with numpy.test() ). If anyone knows how to fix these problems please let me
know. I already had LAPACK and BLAS installed. I also included diagnostic
information after the warnings & errors. Sorry if this email is too long.

Thanks for any help/suggestions.
Sam

>>> import scipy
>>> scipy.test()
Warning: FAILURE importing tests for <module 'scipy.linalg.lapack' from
'...ckages/scipy/linalg/lapack.pyc'>
/usr/arch/lib/python2.4/site-packages/scipy/linalg/basic.py:23: ImportError:
cannot import name calc_lwork (in ?)
  Found 42 tests for scipy.lib.lapack
Warning: FAILURE importing tests for <module 'scipy.special.basic' from
'...ckages/scipy/special/basic.pyc'>
/usr/arch/lib/python2.4/site-packages/scipy/linalg/basic.py:23: ImportError:
cannot import name calc_lwork (in ?)
======================================================================
ERROR: check_integer (scipy.io.tests.test_array_import.test_read_array)
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/arch/lib/python2.4/site-packages/scipy/io/tests/test_array_import.py",
line 55, in check_integer
    from scipy import stats
  File "/usr/arch/lib/python2.4/site-packages/scipy/stats/__init__.py", line
7, in ?
    from stats import *
  File "/usr/arch/lib/python2.4/site-packages/scipy/stats/stats.py", line
191, in ?
    import scipy.special as special
  File "/usr/arch/lib/python2.4/site-packages/scipy/special/__init__.py",
line 10, in ?
    import orthogonal
  File "/usr/arch/lib/python2.4/site-packages/scipy/special/orthogonal.py",
line 67, in ?
    from scipy.linalg import eig
  File "/usr/arch/lib/python2.4/site-packages/scipy/linalg/__init__.py",
line 8, in ?
    from basic import *
  File "/usr/arch/lib/python2.4/site-packages/scipy/linalg/basic.py", line
23, in ?
    from scipy.linalg import calc_lwork
ImportError: cannot import name calc_lwork

======================================================================
ERROR: check loadmat case cellnest
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/arch/lib/python2.4/site-packages/scipy/io/tests/test_mio.py",
line 80, in cc
    self._check_case(name, expected)
  File "/usr/arch/lib/python2.4/site-packages/scipy/io/tests/test_mio.py",
line 75, in _check_case
    self._check_level(k_label, expected, matdict[k])
  File "/usr/arch/lib/python2.4/site-packages/scipy/io/tests/test_mio.py",
line 33, in _check_level
    self._check_level(level_label, ev, actual[i])
  File "/usr/arch/lib/python2.4/site-packages/scipy/io/tests/test_mio.py",
line 33, in _check_level
    self._check_level(level_label, ev, actual[i])
  File "/usr/arch/lib/python2.4/site-packages/scipy/io/tests/test_mio.py",
line 33, in _check_level
    self._check_level(level_label, ev, actual[i])
  File "/usr/arch/lib/python2.4/site-packages/scipy/io/tests/test_mio.py",
line 30, in _check_level
    assert len(expected) == len(actual), "Different list lengths at %s" %
label
TypeError: len() of unsized object

----------------------------------------------------------------------
Ran 630 tests in 7.745s

FAILED (errors=2)

diagnostic information from : python -c 'from numpy.f2py.diagnose import
run; run()'
------
os.name='posix'
------
sys.platform='linux2'
------
sys.version:
2.4.1 (#3, May  9 2005, 14:40:40)
[GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-49)]
------
sys.prefix:
/usr/arch
------
sys.path=':/usr/arch/lib/python24.zip:/usr/arch/lib/python2.4:/usr/arch/lib/python2.4/plat-linux2:/usr/arch/lib/python2.4/lib-tk:/usr/arch/lib/python2.4/lib-dynload:/usr/arch/lib/python2.4/site-packages
'
------
Failed to import Numeric: No module named Numeric
Failed to import numarray: No module named numarray
Found new numpy version '1.0rc2' in
/usr/arch/lib/python2.4/site-packages/numpy/__init__.pyc
Found f2py2e version '2_3296' in
/usr/arch/lib/python2.4/site-packages/numpy/f2py/f2py2e.pyc
Found numpy.distutils version '0.4.0' in
'/usr/arch/lib/python2.4/site-packages/numpy/distutils/__init__.pyc'
------
Importing numpy.distutils.fcompiler ... ok
------
Checking availability of supported Fortran compilers:
customize CompaqFCompiler
customize NoneFCompiler
customize AbsoftFCompiler
Could not locate executable ifort
Could not locate executable ifc
Could not locate executable ifort
Could not locate executable efort
Could not locate executable efc
Could not locate executable ifort
Could not locate executable efort
Could not locate executable efc
customize IntelFCompiler
Could not locate executable gfortran
Could not locate executable f95
customize GnuFCompiler
customize SunFCompiler
customize NAGFCompiler
customize VastFCompiler
customize GnuFCompiler
customize IbmFCompiler
customize Gnu95FCompiler
customize IntelVisualFCompiler
customize G95FCompiler
customize IntelItaniumFCompiler
customize PGroupFCompiler
customize LaheyFCompiler
customize CompaqVisualFCompiler
customize MipsFCompiler
customize HPUXFCompiler
customize IntelItaniumVisualFCompiler
customize IntelEM64TFCompiler
List of available Fortran compilers:
  --fcompiler=gnu  GNU Fortran Compiler (3.2.3)
List of unavailable Fortran compilers:
  --fcompiler=absoft   Absoft Corp Fortran Compiler
  --fcompiler=compaq   Compaq Fortran Compiler
  --fcompiler=compaqv  DIGITAL|Compaq Visual Fortran Compiler
  --fcompiler=g95      G95 Fortran Compiler
  --fcompiler=gnu95    GNU 95 Fortran Compiler
  --fcompiler=hpux     HP Fortran 90 Compiler
  --fcompiler=ibm      IBM XL Fortran Compiler
  --fcompiler=intel    Intel Fortran Compiler for 32-bit apps
  --fcompiler=intele   Intel Fortran Compiler for Itanium apps
  --fcompiler=intelem  Intel Fortran Compiler for EM64T-based apps
  --fcompiler=intelev  Intel Visual Fortran Compiler for Itanium apps
  --fcompiler=intelv   Intel Visual Fortran Compiler for 32-bit apps
  --fcompiler=lahey    Lahey/Fujitsu Fortran 95 Compiler
  --fcompiler=mips     MIPSpro Fortran Compiler
  --fcompiler=nag      NAGWare Fortran 95 Compiler
  --fcompiler=none     Fake Fortran compiler
  --fcompiler=pg       Portland Group Fortran Compiler
  --fcompiler=sun      Sun|Forte Fortran 95 Compiler
  --fcompiler=vast     Pacific-Sierra Research Fortran 90 Compiler
List of unimplemented Fortran compilers:
  --fcompiler=f  Fortran Company/NAG F Compiler
For compiler details, run 'config_fc --verbose' setup command.
------
Importing numpy.distutils.cpuinfo ... ok
------
CPU information: getNCPUs has_mmx has_sse is_32bit is_Intel is_Pentium
is_PentiumII is_PentiumIII is_i686 ------
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