[SciPy-user] scipy installation, slightly better, but not there yet: still looking for cblas_dtrsm and others

Eric Emsellem emsellem at obs.univ-lyon1.fr
Wed Jan 24 05:08:41 CST 2007


Back... Now I have numpy running fine (all tests ok). But scipy is still
having problems.
Sorry for all this, but at this point I have no clue what to do anymore.
(it is clear I don't have umfpack, but I guess this is not a problem,
just a matter of choice. I am more concerned with the optimize failures)

cheers

Eric
===============================================
## Below are the failures I get when launching scipy.test
## (only including the failure, many tests look ok):

>>> scipy.test()
Warning: FAILURE importing tests for <module
'scipy.linsolve.umfpack.umfpack' from '...y/linsolve/umfpack/umfpack.pyc'>
/usr/local/lib/python2.4/site-packages/scipy/linsolve/umfpack/tests/test_umfpack.py:17:
AttributeError: 'module' object has no attribute 'umfpack' (in ?)
 ...

Warning: FAILURE importing tests for <module 'scipy.optimize.optimize'
from '...es/scipy/optimize/optimize.pyc'>
/usr/local/lib/python2.4/site-packages/scipy/optimize/lbfgsb.py:30:
ImportError:
/usr/local/lib/python2.4/site-packages/scipy/optimize/_lbfgsb.so:
undefined sym
bol: cblas_dtrsm (in ?)
 
...

Warning: FAILURE importing tests for <module 'scipy.linsolve.umfpack'
from '.../linsolve/umfpack/__init__.pyc'>
/usr/local/lib/python2.4/site-packages/scipy/linsolve/umfpack/tests/test_umfpack.py:17:
AttributeError: 'module' object has no attribute 'umfpack' (in ?)
Warning: FAILURE importing tests for <module 'scipy.optimize.zeros' from
'...kages/scipy/optimize/zeros.pyc'>
/usr/local/lib/python2.4/site-packages/scipy/optimize/lbfgsb.py:30:
ImportError:
/usr/local/lib/python2.4/site-packages/scipy/optimize/_lbfgsb.so:
undefined sym
bol: cblas_dtrsm (in ?)

...

Warning: FAILURE importing tests for <module 'scipy.special.basic' from
'...ckages/scipy/special/basic.pyc'>
/usr/local/lib/python2.4/site-packages/scipy/linalg/lapack.py:17:
ImportError:
/usr/local/lib/python2.4/site-packages/scipy/linalg/flapack.so:
undefined symbol:
 ATL_xerbla (in ?)
 
 
======================================================================
ERROR: check_integer (scipy.io.tests.test_array_import.test_read_array)
----------------------------------------------------------------------
Traceback (most recent call last):
  File
"/usr/local/lib/python2.4/site-packages/scipy/io/tests/test_array_import.py",
line 55, in check_integer
    from scipy import stats
  File "/usr/local/lib/python2.4/site-packages/scipy/stats/__init__.py",
line 7, in ?
    from stats import *
  File "/usr/local/lib/python2.4/site-packages/scipy/stats/stats.py",
line 190, in ?
    import scipy.special as special
  File
"/usr/local/lib/python2.4/site-packages/scipy/special/__init__.py", line
10, in ?
    import orthogonal
  File
"/usr/local/lib/python2.4/site-packages/scipy/special/orthogonal.py",
line 65, in ?
    from scipy.linalg import eig
  File
"/usr/local/lib/python2.4/site-packages/scipy/linalg/__init__.py", line
8, in ?
    from basic import *
  File "/usr/local/lib/python2.4/site-packages/scipy/linalg/basic.py",
line 17, in ?
    from lapack import get_lapack_funcs
  File "/usr/local/lib/python2.4/site-packages/scipy/linalg/lapack.py",
line 17, in ?
    from scipy.linalg import flapack
ImportError:
/usr/local/lib/python2.4/site-packages/scipy/linalg/flapack.so:
undefined symbol: ATL_xerbla

----------------------------------------------------------------------
Ran 752 tests in 3.335s

FAILED (errors=1)
<unittest.TextTestRunner object at 0xb7420c8c>

-- 
====================================================================
Eric Emsellem                             emsellem at obs.univ-lyon1.fr
                           Centre de Recherche Astrophysique de Lyon
9 av. Charles-Andre                        tel: +33 (0)4 78 86 83 84
69561 Saint-Genis Laval Cedex              fax: +33 (0)4 78 86 83 86
France                    http://www-obs.univ-lyon1.fr/eric.emsellem
====================================================================



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