[SciPy-user] build problem on 64bit RHE4

Christopher Hanley chanley@stsci....
Fri Sep 21 11:55:39 CDT 2007


Hi,

We are having a problem building scipy on one of our RHE4 systems.

This was the initial error. We installed the full blas libraries from 
netlib,
defined the BLAS_SRC env variable and got an error about missing LAPACK
libraries.

This use to be a problem on 32bit machines but was fixed long ago. 

Any help would be appreciated.

Thanks,
Chris


-----------
Build Log: This is on RH4 AMD Opteron machine.


lapack_opt_info:
lapack_mkl_info:
  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in 
/usr/stsci/pyssg/Python-2.5.1/lib
  libraries lapack_atlas not found in /usr/stsci/pyssg/Python-2.5.1/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_threads_info
  NOT AVAILABLE

atlas_info:
  libraries f77blas,cblas,atlas not found in 
/usr/stsci/pyssg/Python-2.5.1/lib
  libraries lapack_atlas not found in /usr/stsci/pyssg/Python-2.5.1/lib
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries f77blas,cblas,atlas not found in /usr/lib
  libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_info
  NOT AVAILABLE

/usr/stsci/source/install-scipy/numpy/distutils/system_info.py:1221: 
UserWarning:
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
lapack_info:
  libraries lapack not found in /usr/stsci/pyssg/Python-2.5.1/lib
  libraries lapack not found in /usr/local/lib
  libraries lapack not found in /usr/lib
  NOT AVAILABLE

/usr/stsci/source/install-scipy/numpy/distutils/system_info.py:1232: 
UserWarning:
    Lapack (http://www.netlib.org/lapack/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [lapack]) or by setting
    the LAPACK environment variable.
  warnings.warn(LapackNotFoundError.__doc__)
lapack_src_info:
  NOT AVAILABLE

/usr/stsci/source/install-scipy/numpy/distutils/system_info.py:1235: 
UserWarning:
    Lapack (http://www.netlib.org/lapack/) sources not found.
    Directories to search for the sources can be specified in the
    numpy/distutils/site.cfg file (section [lapack_src]) or by setting
    the LAPACK_SRC environment variable.
  warnings.warn(LapackSrcNotFoundError.__doc__)
Traceback (most recent call last):
  File "setup.py", line 53, in <module>
    setup_package()
  File "setup.py", line 45, in setup_package
    configuration=configuration )
  File "../install-scipy/numpy/distutils/core.py", line 142, in setup
    config = configuration()
  File "setup.py", line 19, in configuration
    config.add_subpackage('scipy')
  File "../install-scipy/numpy/distutils/misc_util.py", line 772, in 
add_subpackage
    caller_level = 2)
  File "../install-scipy/numpy/distutils/misc_util.py", line 755, in 
get_subpackage
    caller_level = caller_level + 1)
  File "../install-scipy/numpy/distutils/misc_util.py", line 702, in 
_get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "/tmp_mnt/stsciEWS4_x64/source/scipy-0.6.0/scipy/setup.py", line 
10, in configuration
    config.add_subpackage('lib')
  File "../install-scipy/numpy/distutils/misc_util.py", line 772, in 
add_subpackage
    caller_level = 2)
  File "../install-scipy/numpy/distutils/misc_util.py", line 755, in 
get_subpackage
    caller_level = caller_level + 1)
  File "../install-scipy/numpy/distutils/misc_util.py", line 702, in 
_get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/lib/setup.py", line 8, in configuration
    config.add_subpackage('lapack')
  File "../install-scipy/numpy/distutils/misc_util.py", line 772, in 
add_subpackage
    caller_level = 2)
  File "../install-scipy/numpy/distutils/misc_util.py", line 755, in 
get_subpackage
    caller_level = caller_level + 1)
  File "../install-scipy/numpy/distutils/misc_util.py", line 702, in 
_get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/lib/lapack/setup.py", line 32, in configuration
    lapack_opt = get_info('lapack_opt',notfound_action=2)
  File "../install-scipy/numpy/distutils/system_info.py", line 256, in 
get_info
    return cl().get_info(notfound_action)
  File "../install-scipy/numpy/distutils/system_info.py", line 405, in 
get_info
    raise self.notfounderror,self.notfounderror.__doc__
numpy.distutils.system_info.LapackNotFoundError:
    Lapack (http://www.netlib.org/lapack/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [lapack]) or by setting
    the LAPACK environment variable.

-- 
Christopher Hanley
Systems Software Engineer
Space Telescope Science Institute
3700 San Martin Drive
Baltimore MD, 21218
(410) 338-4338





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