[SciPy-user] Building Scipy with ifort in Mac os X 10.5.2

Andres Gonzalez-Mancera gonzalezmancera+scipy@gmail....
Sat Apr 12 21:00:28 CDT 2008


Hi all,
I'm trying to build Scipy with ifort on a core 2 duo iMac running 10.5.2 and
the latest version of the developer tools. I'm using python 2.5.2 from
python.org. In the same system I'm able to build and run Scipy with gfortran
from the att research web site without any problems. I do not have the intel
C compiler so I'm using gcc for this purpose.

I'm using the 32 bit version of ifort 10.1.014 with 10.0.2.018 version of
the intel MKL. I haven't been able to find concrete building instructions so
I'm following the instructions in scipy.org except I'm using:

python setup.py build_src build_clib --fcompiler=intel build_ext
--fcompiler=intel build

to build Scipy. The build process fails with the following message:

creating build/lib.macosx-10.3-i386-2.5/scipy/fftpack
/opt/intel/fc/10.1.014/bin/ifort -shared -shared -nofor_main
build/temp.macosx-10.3-i386-2.5/build/src.macosx-10.3-i386-2.5/scipy/fftpack/_fftpackmodule.o
build/temp.macosx-10.3-i386-2.5/scipy/fftpack/src/zfft.o
build/temp.macosx-10.3-i386-2.5/scipy/fftpack/src/drfft.o
build/temp.macosx-10.3-i386-2.5/scipy/fftpack/src/zrfft.o
build/temp.macosx-10.3-i386-2.5/scipy/fftpack/src/zfftnd.o
build/temp.macosx-10.3-i386-2.5/build/src.macosx-10.3-i386-2.5/fortranobject.o
-L/usr/local/lib -Lbuild/temp.macosx-10.3-i386-2.5 -ldfftpack -lfftw3 -o
build/lib.macosx-10.3-i386-2.5/scipy/fftpack/_fftpack.so
ifort: command line warning #10156: ignoring option '-s'; no argument
required
ifort: command line warning #10156: ignoring option '-s'; no argument
required
Undefined symbols:
  "_PyExc_AttributeError", referenced from:
      _PyExc_AttributeError$non_lazy_ptr in fortranobject.o
  "_PyObject_Str", referenced from:
      _array_from_pyobj in fortranobject.o
  "_PyArg_ParseTupleAndKeywords", referenced from:
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfft_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfftnd_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_drfft_cache in _fftpackmodule.o
  "_PyExc_ValueError", referenced from:
      _PyExc_ValueError$non_lazy_ptr in fortranobject.o
  "_PyExc_TypeError", referenced from:
      _PyExc_TypeError$non_lazy_ptr in fortranobject.o
  "_PyDict_GetItemString", referenced from:
      _fortran_getattr in fortranobject.o
  "_PyCObject_AsVoidPtr", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_Py_BuildValue", referenced from:
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfft_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfftnd_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_drfft_cache in _fftpackmodule.o
  "_PyComplex_Type", referenced from:
      _PyComplex_Type$non_lazy_ptr in _fftpackmodule.o
  "_PyDict_New", referenced from:
      _PyFortranObject_NewAsAttr in fortranobject.o
      _fortran_setattr in fortranobject.o
      _PyFortranObject_New in fortranobject.o
      _PyFortranObject_New in fortranobject.o
  "_MAIN__", referenced from:
      _main in libifcore.a(for_main.o)
  "_PyDict_SetItemString", referenced from:
      _init_fftpack in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _F2PyDict_SetItemString in fortranobject.o
      _fortran_getattr in fortranobject.o
      _fortran_getattr in fortranobject.o
      _fortran_setattr in fortranobject.o
      _PyFortranObject_New in fortranobject.o
  "_PyType_Type", referenced from:
      _PyType_Type$non_lazy_ptr in _fftpackmodule.o
  "__PyObject_New", referenced from:
      _PyFortranObject_NewAsAttr in fortranobject.o
      _PyFortranObject_New in fortranobject.o
      _PyFortranObject_New in fortranobject.o
  "_PyInt_Type", referenced from:
      _PyInt_Type$non_lazy_ptr in _fftpackmodule.o
  "_PyString_FromString", referenced from:
      _init_fftpack in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _fortran_getattr in fortranobject.o
      _fortran_getattr in fortranobject.o
  "_PyErr_Occurred", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfft_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfftnd_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_drfft_cache in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _F2PyDict_SetItemString in fortranobject.o
  "_PyErr_NewException", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_PyImport_ImportModule", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_PyMem_Free", referenced from:
      _fortran_dealloc in fortranobject.o
      _fortran_dealloc in fortranobject.o
  "_PyCObject_Type", referenced from:
      _PyCObject_Type$non_lazy_ptr in _fftpackmodule.o
  "_PyExc_ImportError", referenced from:
      _PyExc_ImportError$non_lazy_ptr in _fftpackmodule.o
  "_PyErr_Format", referenced from:
      _init_fftpack in _fftpackmodule.o
      _fortran_call in fortranobject.o
      _fortran_call in fortranobject.o
  "_PyNumber_Int", referenced from:
      _int_from_pyobj in _fftpackmodule.o
  "_PyCObject_FromVoidPtr", referenced from:
      _fortran_getattr in fortranobject.o
  "_PyObject_GetAttrString", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
  "_PyErr_Print", referenced from:
      _init_fftpack in _fftpackmodule.o
      _F2PyDict_SetItemString in fortranobject.o
  "_PyString_Type", referenced from:
      _PyString_Type$non_lazy_ptr in _fftpackmodule.o
  "__Py_NoneStruct", referenced from:
      __Py_NoneStruct$non_lazy_ptr in _fftpackmodule.o
      __Py_NoneStruct$non_lazy_ptr in fortranobject.o
  "_Py_FindMethod", referenced from:
      _fortran_getattr in fortranobject.o
  "_PyString_ConcatAndDel", referenced from:
      _fortran_getattr in fortranobject.o
  "_PyErr_Clear", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _F2PyDict_SetItemString in fortranobject.o
  "_Py_InitModule4", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_PyModule_GetDict", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_PyExc_RuntimeError", referenced from:
      _PyExc_RuntimeError$non_lazy_ptr in _fftpackmodule.o
      _PyExc_RuntimeError$non_lazy_ptr in fortranobject.o
  "_PyDict_DelItemString", referenced from:
      _fortran_setattr in fortranobject.o
  "_PyObject_Type", referenced from:
      _array_from_pyobj in fortranobject.o
  "_PySequence_Check", referenced from:
      _int_from_pyobj in _fftpackmodule.o
  "_PyString_AsString", referenced from:
      _array_from_pyobj in fortranobject.o
  "_PySequence_GetItem", referenced from:
      _int_from_pyobj in _fftpackmodule.o
  "_PyErr_SetString", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _array_from_pyobj in fortranobject.o
      _fortran_setattr in fortranobject.o
      _fortran_setattr in fortranobject.o
  "_PyType_IsSubtype", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _int_from_pyobj in _fftpackmodule.o
      _int_from_pyobj in _fftpackmodule.o
      _array_from_pyobj in fortranobject.o
ld: symbol(s) not found
ifort: command line warning #10156: ignoring option '-s'; no argument
required
ifort: command line warning #10156: ignoring option '-s'; no argument
required
Undefined symbols:
  "_PyExc_AttributeError", referenced from:
      _PyExc_AttributeError$non_lazy_ptr in fortranobject.o
  "_PyObject_Str", referenced from:
      _array_from_pyobj in fortranobject.o
  "_PyArg_ParseTupleAndKeywords", referenced from:
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfft_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfftnd_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_drfft_cache in _fftpackmodule.o
  "_PyExc_ValueError", referenced from:
      _PyExc_ValueError$non_lazy_ptr in fortranobject.o
  "_PyExc_TypeError", referenced from:
      _PyExc_TypeError$non_lazy_ptr in fortranobject.o
  "_PyDict_GetItemString", referenced from:
      _fortran_getattr in fortranobject.o
  "_PyCObject_AsVoidPtr", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_Py_BuildValue", referenced from:
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfft_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfftnd_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_drfft_cache in _fftpackmodule.o
  "_PyComplex_Type", referenced from:
      _PyComplex_Type$non_lazy_ptr in _fftpackmodule.o
  "_PyDict_New", referenced from:
      _PyFortranObject_NewAsAttr in fortranobject.o
      _fortran_setattr in fortranobject.o
      _PyFortranObject_New in fortranobject.o
      _PyFortranObject_New in fortranobject.o
  "_MAIN__", referenced from:
      _main in libifcore.a(for_main.o)
  "_PyDict_SetItemString", referenced from:
      _init_fftpack in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _F2PyDict_SetItemString in fortranobject.o
      _fortran_getattr in fortranobject.o
      _fortran_getattr in fortranobject.o
      _fortran_setattr in fortranobject.o
      _PyFortranObject_New in fortranobject.o
  "_PyType_Type", referenced from:
      _PyType_Type$non_lazy_ptr in _fftpackmodule.o
  "__PyObject_New", referenced from:
      _PyFortranObject_NewAsAttr in fortranobject.o
      _PyFortranObject_New in fortranobject.o
      _PyFortranObject_New in fortranobject.o
  "_PyInt_Type", referenced from:
      _PyInt_Type$non_lazy_ptr in _fftpackmodule.o
  "_PyString_FromString", referenced from:
      _init_fftpack in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _fortran_getattr in fortranobject.o
      _fortran_getattr in fortranobject.o
  "_PyErr_Occurred", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfft_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_zfftnd_cache in _fftpackmodule.o
      _f2py_rout__fftpack_destroy_drfft_cache in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _F2PyDict_SetItemString in fortranobject.o
  "_PyErr_NewException", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_PyImport_ImportModule", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_PyMem_Free", referenced from:
      _fortran_dealloc in fortranobject.o
      _fortran_dealloc in fortranobject.o
  "_PyCObject_Type", referenced from:
      _PyCObject_Type$non_lazy_ptr in _fftpackmodule.o
  "_PyExc_ImportError", referenced from:
      _PyExc_ImportError$non_lazy_ptr in _fftpackmodule.o
  "_PyErr_Format", referenced from:
      _init_fftpack in _fftpackmodule.o
      _fortran_call in fortranobject.o
      _fortran_call in fortranobject.o
  "_PyNumber_Int", referenced from:
      _int_from_pyobj in _fftpackmodule.o
  "_PyCObject_FromVoidPtr", referenced from:
      _fortran_getattr in fortranobject.o
  "_PyObject_GetAttrString", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
  "_PyErr_Print", referenced from:
      _init_fftpack in _fftpackmodule.o
      _F2PyDict_SetItemString in fortranobject.o
  "_PyString_Type", referenced from:
      _PyString_Type$non_lazy_ptr in _fftpackmodule.o
  "__Py_NoneStruct", referenced from:
      __Py_NoneStruct$non_lazy_ptr in _fftpackmodule.o
      __Py_NoneStruct$non_lazy_ptr in fortranobject.o
  "_Py_FindMethod", referenced from:
      _fortran_getattr in fortranobject.o
  "_PyString_ConcatAndDel", referenced from:
      _fortran_getattr in fortranobject.o
  "_PyErr_Clear", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _F2PyDict_SetItemString in fortranobject.o
  "_Py_InitModule4", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_PyModule_GetDict", referenced from:
      _init_fftpack in _fftpackmodule.o
  "_PyExc_RuntimeError", referenced from:
      _PyExc_RuntimeError$non_lazy_ptr in _fftpackmodule.o
      _PyExc_RuntimeError$non_lazy_ptr in fortranobject.o
  "_PyDict_DelItemString", referenced from:
      _fortran_setattr in fortranobject.o
  "_PyObject_Type", referenced from:
      _array_from_pyobj in fortranobject.o
  "_PySequence_Check", referenced from:
      _int_from_pyobj in _fftpackmodule.o
  "_PyString_AsString", referenced from:
      _array_from_pyobj in fortranobject.o
  "_PySequence_GetItem", referenced from:
      _int_from_pyobj in _fftpackmodule.o
  "_PyErr_SetString", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_drfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zrfft in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
      _init_fftpack in _fftpackmodule.o
      _array_from_pyobj in fortranobject.o
      _fortran_setattr in fortranobject.o
      _fortran_setattr in fortranobject.o
  "_PyType_IsSubtype", referenced from:
      _int_from_pyobj in _fftpackmodule.o
      _int_from_pyobj in _fftpackmodule.o
      _int_from_pyobj in _fftpackmodule.o
      _array_from_pyobj in fortranobject.o
ld: symbol(s) not found
error: Command "/opt/intel/fc/10.1.014/bin/ifort -shared -shared -nofor_main
build/temp.macosx-10.3-i386-2.5/build/src.macosx-10.3-i386-2.5/scipy/fftpack/_fftpackmodule.o
build/temp.macosx-10.3-i386-2.5/scipy/fftpack/src/zfft.o
build/temp.macosx-10.3-i386-2.5/scipy/fftpack/src/drfft.o
build/temp.macosx-10.3-i386-2.5/scipy/fftpack/src/zrfft.o
build/temp.macosx-10.3-i386-2.5/scipy/fftpack/src/zfftnd.o
build/temp.macosx-10.3-i386-2.5/build/src.macosx-10.3-i386-2.5/fortranobject.o
-L/usr/local/lib -Lbuild/temp.macosx-10.3-i386-2.5 -ldfftpack -lfftw3 -o
build/lib.macosx-10.3-i386-2.5/scipy/fftpack/_fftpack.so" failed with exit
status 1

I appreciate any advice. Thanks,

Andrés
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