[SciPy-user] Correlate Times?
Johann Cohen-Tanugi
cohen@slac.stanford....
Thu Jan 17 20:12:10 CST 2008
hi Ryan, I see the same effect on my box (I actually lost patience and
killed SS). Note that you forgot an "import numpy as N".
Anyway :
In [15]: ?N.correlate
Type: function
Base Class: <type 'function'>
String Form: <function correlate at 0x8bd1064>
Namespace: Interactive
File: /usr/lib/python2.5/site-packages/numpy/core/numeric.py
Definition: N.correlate(a, v, mode='valid')
Docstring:
Return the discrete, linear correlation of 1-D sequences a and v; mode
can be 'valid', 'same', or 'full' to specify the size of the resulting
sequence
In [16]: ?S.correlate
Type: function
Base Class: <type 'function'>
String Form: <function correlate at 0x8bd1064>
Namespace: Interactive
File: /usr/lib/python2.5/site-packages/numpy/core/numeric.py
Definition: S.correlate(a, v, mode='valid')
Docstring:
Return the discrete, linear correlation of 1-D sequences a and v; mode
can be 'valid', 'same', or 'full' to specify the size of the resulting
sequence
In [19]: ?SS.correlate
Type: function
Base Class: <type 'function'>
String Form: <function correlate at 0x8ea341c>
Namespace: Interactive
File: /usr/lib/python2.5/site-packages/scipy/signal/signaltools.py
Definition: SS.correlate(in1, in2, mode='full')
Docstring:
Cross-correlate two N-dimensional arrays.
Description:
Cross-correlate in1 and in2 with the output size determined by mode.
Inputs:
in1 -- an N-dimensional array.
in2 -- an array with the same number of dimensions as in1.
mode -- a flag indicating the size of the output
'valid' (0): The output consists only of those elements that
do not rely on the zero-padding.
'same' (1): The output is the same size as the largest input
centered with respect to the 'full' output.
'full' (2): The output is the full discrete linear
cross-correlation of the inputs. (Default)
Outputs: (out,)
out -- an N-dimensional array containing a subset of the discrete
linear
cross-correlation of in1 with in2.
So, S calls N.correlate, and it is a 1D array function, while SS accepts
N-dim array.
Nevertheless, the cost when the array is 1D is strange for SS, and if it
is a feature, it should maybe check array dim and default to the numpy
implementation when 1D....
best,
Johann
Ryan May wrote:
> Hey,
>
> Can someone explain this to me?
>
> In [3]: import scipy as S
>
> In [5]: import scipy.signal as SS
>
> In [6]: from numpy.random import rand
>
> In [7]: up = rand(18000)
>
> In [10]: %timeit N.correlate(up,up,mode='full')
> 10 loops, best of 3: 829 ms per loop
>
> In [11]: %timeit S.correlate(up,up,mode='full')
> 10 loops, best of 3: 827 ms per loop
>
> In [12]: %timeit SS.correlate(up,up,mode='full')
> 10 loops, best of 3: 11.5 s per loop
>
> Is this a configuration problem? If not, why does
> scipy.signal.correlate even exist?
>
> Thanks,
>
> Ryan
>
>
More information about the SciPy-user
mailing list