[SciPy-user] scipy 0.7.0.dev4373 + atlas FAILED (failures=2, errors=12)

Xavier Gnata xavier.gnata@gmail....
Fri May 16 16:58:11 CDT 2008


Robert Kern wrote:
> On Fri, May 16, 2008 at 4:33 PM, Xavier Gnata <xavier.gnata@gmail.com> wrote:
>   
>> Hi,
>>
>> I have compiled ATLAS following
>> http://www.scipy.org/Installing_SciPy/Linux#head-1c4018a51422706809ee96a4db03ca0669f5f6d1
>> on Ubuntu hardy gcc-4.3 64bits .
>>
>> everything look fine but  scipy.test() fails in a quite bad way :
>> ----------------------------------------------------------------------
>> Ran 1567 tests in 11.328s
>>
>> FAILED (failures=2, errors=12)
>>
>> Is it well-known that some tests of scipy 0.7.0.dev4373 fail ?
>> I can send you the quite long log if needed.
>>     
>
> Just show us the parts at the end showing the failures.
>
>   
>> The point is that the user has no real way to know it there is something
>> wrong in the a ATLAS installation or if the errors are in the testsuite.
>>
>> When I see for instance "ERROR: Failure: ImportError (cannot import name
>> flapack)" I must admit that it looks like a wrong installation of ATLAS
>> but what should I do now ??
>>     
>
> It might just be a problem with the build of scipy rather than the
> ATLAS library itself. Show us scipy's build output.
>
>   

Here it is. Ok it is long but I cannot cut it without removing an 
interesting part :

/usr/lib/python2.5/site-packages/scipy/linsolve/__init__.py:4: 
DeprecationWarning: scipy.linsolve has moved to scipy.sparse.linalg.dsolve
  warn('scipy.linsolve has moved to scipy.sparse.linalg.dsolve', 
DeprecationWarning)
/usr/lib/python2.5/site-packages/scipy/sparse/linalg/dsolve/linsolve.py:20: 
DeprecationWarning: scipy.sparse.linalg.dsolve.umfpack will be removed, 
install scikits.umfpack instead
  ' install scikits.umfpack instead', DeprecationWarning )
/usr/lib/python2.5/site-packages/scipy/splinalg/__init__.py:3: 
DeprecationWarning: scipy.splinalg has moved to scipy.sparse.linalg
  warn('scipy.splinalg has moved to scipy.sparse.linalg', 
DeprecationWarning)
E..........................................E.............E...............................
Don't worry about a warning regarding the number of bytes read.
Warning: 1000000 bytes requested, 20 bytes read.
./usr/lib/python2.5/site-packages/numpy/lib/utils.py:114: 
DeprecationWarning: write_array is deprecated
  warnings.warn(str1, DeprecationWarning)
/usr/lib/python2.5/site-packages/numpy/lib/utils.py:114: 
DeprecationWarning: read_array is deprecated
  warnings.warn(str1, DeprecationWarning)
..E................../usr/lib/python2.5/site-packages/numpy/lib/utils.py:114: 
DeprecationWarning: npfile is deprecated
  warnings.warn(str1, DeprecationWarning)
............................caxpy:n=4
..caxpy:n=3
....ccopy:n=4
..ccopy:n=3
.............cscal:n=4
....cswap:n=4
..cswap:n=3
.....daxpy:n=4
..daxpy:n=3
....dcopy:n=4
..dcopy:n=3
.............dscal:n=4
....dswap:n=4
..dswap:n=3
.....saxpy:n=4
..saxpy:n=3
....scopy:n=4
..scopy:n=3
.............sscal:n=4
....sswap:n=4
..sswap:n=3
.....zaxpy:n=4
..zaxpy:n=3
....zcopy:n=4
..zcopy:n=3
.............zscal:n=4
....zswap:n=4
..zswap:n=3
..EEE............................................................................................................................................................................................................................................................................................................................................................................................................/usr/lib/python2.5/site-packages/scipy/ndimage/_segmenter.py:30: 
UserWarning: The segmentation code is under heavy development and 
therefore the public API will change in the future.  The NIPY group is 
actively working on this code, and has every intention of generalizing 
this for the Scipy community.  Use this module minimally, if at all, 
until it this warning is removed.
  warnings.warn(_msg, UserWarning)
...F....................................E...........E....
 _naupd: Number of update iterations taken
 -----------------------------------------
    1 -    1:    11


 _naupd: Number of wanted "converged" Ritz values
 ------------------------------------------------
    1 -    1:     4


 _naupd: Real part of the final Ritz values
 ------------------------------------------
    1 -    4:   1.033D+00   7.746D-01   5.164D-01   2.582D-01


 _naupd: Imaginary part of the final Ritz values
 -----------------------------------------------
    1 -    4:   0.000D+00   0.000D+00   0.000D+00   0.000D+00


 _naupd: Associated Ritz estimates
 ---------------------------------
    1 -    4:   2.700D-15   6.598D-19   1.478D-22   4.431D-26



     =============================================
     = Nonsymmetric implicit Arnoldi update code =
     = Version Number:  2.4                      =
     = Version Date:    07/31/96                 =
     =============================================
     = Summary of timing statistics              =
     =============================================


     Total number update iterations             =    11
     Total number of OP*x operations            =    52
     Total number of B*x operations             =     0
     Total number of reorthogonalization steps  =    51
     Total number of iterative refinement steps =     0
     Total number of restart steps              =     0
     Total time in user OP*x operation          =     0.004001
     Total time in user B*x operation           =     0.000000
     Total time in Arnoldi update routine       =     0.004001
     Total time in naup2 routine                =     0.004001
     Total time in basic Arnoldi iteration loop =     0.004001
     Total time in reorthogonalization phase    =     0.000000
     Total time in (re)start vector generation  =     0.000000
     Total time in Hessenberg eig. subproblem   =     0.000000
     Total time in getting the shifts           =     0.000000
     Total time in applying the shifts          =     0.000000
     Total time in convergence testing          =     0.000000
     Total time in computing final Ritz vectors =     0.000000

.EE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F...........................................................................................................................................................E...warning: 
specified build_dir '_bad_path_' does not exist or is not writable. 
Trying default locations
...warning: specified build_dir '..' does not exist or is not writable. 
Trying default locations
..warning: specified build_dir '_bad_path_' does not exist or is not 
writable. Trying default locations
...warning: specified build_dir '..' does not exist or is not writable. 
Trying default locations
............................building extensions here: 
/home/gnata/.python25_compiled/m12
................................................................................................
======================================================================
ERROR: Failure: ImportError 
(/usr/lib/python2.5/site-packages/scipy/linalg/clapack.so: undefined 
symbol: clapack_sgesv)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.5/site-packages/scipy/cluster/__init__.py", 
line 9, in <module>
    import vq, hierarchy
  File "/usr/lib/python2.5/site-packages/scipy/cluster/hierarchy.py", 
line 178, in <module>
    import _hierarchy_wrap, scipy, types, math, sys, scipy.stats
  File "/usr/lib/python2.5/site-packages/scipy/stats/__init__.py", line 
7, in <module>
    from stats import *
  File "/usr/lib/python2.5/site-packages/scipy/stats/stats.py", line 
192, in <module>
    import scipy.linalg as linalg
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
18, in <module>
    from scipy.linalg import clapack
ImportError: /usr/lib/python2.5/site-packages/scipy/linalg/clapack.so: 
undefined symbol: clapack_sgesv

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File 
"/usr/lib/python2.5/site-packages/scipy/integrate/tests/test_integrate.py", 
line 9, in <module>
    from scipy.linalg import norm
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.5/site-packages/scipy/interpolate/__init__.py", 
line 7, in <module>
    from interpolate import *
  File 
"/usr/lib/python2.5/site-packages/scipy/interpolate/interpolate.py", 
line 13, in <module>
    import scipy.linalg as slin
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: test_integer (test_array_import.TestReadArray)
----------------------------------------------------------------------
Traceback (most recent call last):
  File 
"/usr/lib/python2.5/site-packages/scipy/io/tests/test_array_import.py", 
line 51, in test_integer
    from scipy import stats
  File "/usr/lib/python2.5/site-packages/scipy/stats/__init__.py", line 
7, in <module>
    from stats import *
  File "/usr/lib/python2.5/site-packages/scipy/stats/stats.py", line 
192, in <module>
    import scipy.linalg as linalg
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: Failure: ImportError 
(/usr/lib/python2.5/site-packages/scipy/lib/lapack/clapack.so: undefined 
symbol: clapack_sgesv)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.5/site-packages/scipy/lib/lapack/__init__.py", 
line 16, in <module>
    import clapack
ImportError: 
/usr/lib/python2.5/site-packages/scipy/lib/lapack/clapack.so: undefined 
symbol: clapack_sgesv

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.5/site-packages/scipy/maxentropy/__init__.py", 
line 9, in <module>
    from maxentropy import *
  File 
"/usr/lib/python2.5/site-packages/scipy/maxentropy/maxentropy.py", line 
75, in <module>
    from scipy.linalg import norm
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.5/site-packages/scipy/signal/__init__.py", line 
11, in <module>
    from ltisys import *
  File "/usr/lib/python2.5/site-packages/scipy/signal/ltisys.py", line 
9, in <module>
    import scipy.interpolate as interpolate
  File "/usr/lib/python2.5/site-packages/scipy/interpolate/__init__.py", 
line 7, in <module>
    from interpolate import *
  File 
"/usr/lib/python2.5/site-packages/scipy/interpolate/interpolate.py", 
line 13, in <module>
    import scipy.linalg as slin
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File 
"/usr/lib/python2.5/site-packages/scipy/sparse/linalg/dsolve/tests/test_linsolve.py", 
line 6, in <module>
    from scipy.linalg import norm, inv
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File 
"/usr/lib/python2.5/site-packages/scipy/sparse/linalg/eigen/lobpcg/tests/test_lobpcg.py", 
line 8, in <module>
    from scipy import array, arange, ones, sort, cos, pi, rand, \
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File 
"/usr/lib/python2.5/site-packages/scipy/sparse/linalg/isolve/tests/test_iterative.py", 
line 9, in <module>
    from scipy.linalg import norm
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
ERROR: Failure: ImportError (cannot import name flapack)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/nose/loader.py", line 364, in 
loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 39, in 
importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.5/site-packages/nose/importer.py", line 84, in 
importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python2.5/site-packages/scipy/stats/__init__.py", line 
7, in <module>
    from stats import *
  File "/usr/lib/python2.5/site-packages/scipy/stats/stats.py", line 
192, in <module>
    import scipy.linalg as linalg
  File "/usr/lib/python2.5/site-packages/scipy/linalg/__init__.py", line 
8, in <module>
    from basic import *
  File "/usr/lib/python2.5/site-packages/scipy/linalg/basic.py", line 
17, in <module>
    from lapack import get_lapack_funcs
  File "/usr/lib/python2.5/site-packages/scipy/linalg/lapack.py", line 
17, in <module>
    from scipy.linalg import flapack
ImportError: cannot import name flapack

======================================================================
FAIL: test_texture2 (test_segment.TestSegment)
----------------------------------------------------------------------
Traceback (most recent call last):
  File 
"/usr/lib/python2.5/site-packages/scipy/ndimage/tests/test_segment.py", 
line 152, in test_texture2
    assert_array_almost_equal(tem0, truth_tem0, decimal=6)
  File "/usr/lib/python2.5/site-packages/numpy/testing/utils.py", line 
255, in assert_array_almost_equal
    header='Arrays are not almost equal')
  File "/usr/lib/python2.5/site-packages/numpy/testing/utils.py", line 
240, in assert_array_compare
    assert cond, msg
AssertionError:
Arrays are not almost equal

(mismatch 66.6666666667%)
 x: array([  0.00000000e+00,   0.00000000e+00,   0.00000000e+00,
         0.00000000e+00,   0.00000000e+00,   0.00000000e+00,
         1.91816598e-01,   1.02515288e-01,   9.30087343e-02,...
 y: array([ 0.        ,  0.        ,  0.        ,  0.        ,  0.        ,
        0.        ,  0.13306101,  0.08511007,  0.05084148,  0.07550675,
        0.4334695 ,  0.03715914,  0.00289055,  0.02755581,  0.48142046,
        0.03137803,  0.00671277,  0.51568902,  0.01795249,  0.49102375,  
1.        ], dtype=float32)

======================================================================
FAIL: test_pbdv (test_basic.TestCephes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File 
"/usr/lib/python2.5/site-packages/scipy/special/tests/test_basic.py", 
line 368, in test_pbdv
    assert_equal(cephes.pbdv(1,0),(0.0,0.0))
  File "/usr/lib/python2.5/site-packages/numpy/testing/utils.py", line 
139, in assert_equal
    assert_equal(actual[k], desired[k], 'item=%r\n%s' % (k,err_msg), 
verbose)
  File "/usr/lib/python2.5/site-packages/numpy/testing/utils.py", line 
145, in assert_equal
    assert desired == actual, msg
AssertionError:
Items are not equal:
item=1

 ACTUAL: 1.0
 DESIRED: 0.0

----------------------------------------------------------------------
Ran 1567 tests in 13.438s

FAILED (failures=2, errors=12)




python setup.py build output :


mkl_info:
  libraries mkl,vml,guide not found in /usr/lib
  libraries mkl,vml,guide not found in /usr/local/lib/scipy/lib
  NOT AVAILABLE

fftw3_info:
  FOUND:
    libraries = ['fftw3']
    library_dirs = ['/usr/lib']
    define_macros = [('SCIPY_FFTW3_H', None)]
    include_dirs = ['/usr/include']

djbfft_info:
  NOT AVAILABLE

blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /usr/lib
  libraries mkl,vml,guide not found in /usr/local/lib/scipy/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c
    include_dirs = ['/usr/include']

customize GnuFCompiler
Could not locate executable g77
Could not locate executable f77
customize IntelFCompiler
Could not locate executable ifort
Could not locate executable ifc
customize LaheyFCompiler
Could not locate executable lf95
customize PGroupFCompiler
Could not locate executable pgf90
Could not locate executable pgf77
customize AbsoftFCompiler
Could not locate executable f90
customize NAGFCompiler
Found executable /usr/bin/f95
customize VastFCompiler
customize GnuFCompiler
customize CompaqFCompiler
Could not locate executable fort
customize IntelItaniumFCompiler
Could not locate executable efort
Could not locate executable efc
customize IntelEM64TFCompiler
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 
-Wall -Wstrict-prototypes -fPIC

compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -llapack -lf77blas -lcblas -latlas -o _configtest
ATLAS version 3.8.1 built by root on Tue May 13 00:29:20 CEST 2008:
   UNAME    : Linux dupilon 2.6.24-16-generic #1 SMP Thu Apr 10 12:47:45 
UTC 2008 x86_64 GNU/Linux
   INSTFLG  : -1 0 -a 1
   ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_Core2Duo -DATL_CPUMHZ=2201 
-DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664
   F2CDEFS  : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
   CACHEEDGE: 2097152
   F77      : gfortran, version GNU Fortran (Ubuntu 4.3.0-1ubuntu1) 4.3.0
   F77FLAGS : -O -fPIC -m64
   SMC      : gcc, version gcc (Ubuntu 4.3.0-1ubuntu1) 4.3.0
   SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC
   SKC      : gcc, version gcc (Ubuntu 4.3.0-1ubuntu1) 4.3.0
   SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC
success!
removing: _configtest.c _configtest.o _configtest
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c
    define_macros = [('ATLAS_INFO', '"\\"3.8.1\\""')]
    include_dirs = ['/usr/include']

ATLAS version 3.8.1
lapack_opt_info:
lapack_mkl_info:
  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
  FOUND:
    libraries = ['lapack', 'lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    include_dirs = ['/usr/include']

customize GnuFCompiler
customize IntelFCompiler
customize LaheyFCompiler
customize PGroupFCompiler
customize AbsoftFCompiler
customize NAGFCompiler
customize VastFCompiler
customize GnuFCompiler
customize CompaqFCompiler
customize IntelItaniumFCompiler
customize IntelEM64TFCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 
-Wall -Wstrict-prototypes -fPIC

compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -llapack -llapack -lf77blas -lcblas -latlas 
-o _configtest
ATLAS version 3.8.1 built by root on Tue May 13 00:29:20 CEST 2008:
   UNAME    : Linux dupilon 2.6.24-16-generic #1 SMP Thu Apr 10 12:47:45 
UTC 2008 x86_64 GNU/Linux
   INSTFLG  : -1 0 -a 1
   ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_Core2Duo -DATL_CPUMHZ=2201 
-DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664
   F2CDEFS  : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
   CACHEEDGE: 2097152
   F77      : gfortran, version GNU Fortran (Ubuntu 4.3.0-1ubuntu1) 4.3.0
   F77FLAGS : -O -fPIC -m64
   SMC      : gcc, version gcc (Ubuntu 4.3.0-1ubuntu1) 4.3.0
   SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC
   SKC      : gcc, version gcc (Ubuntu 4.3.0-1ubuntu1) 4.3.0
   SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC
success!
removing: _configtest.c _configtest.o _configtest
  FOUND:
    libraries = ['lapack', 'lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    define_macros = [('ATLAS_INFO', '"\\"3.8.1\\""')]
    include_dirs = ['/usr/include']

ATLAS version 3.8.1
ATLAS version 3.8.1
umfpack_info:
amd_info:
  FOUND:
    libraries = ['amd']
    library_dirs = ['/usr/lib']
    swig_opts = ['-I/usr/include']
    define_macros = [('SCIPY_AMD_H', None)]
    include_dirs = ['/usr/include']

  FOUND:
    libraries = ['umfpack', 'gfortran', 'amd']
    library_dirs = ['/usr/lib']
    swig_opts = ['-I/usr/include', '-I/usr/include']
    define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)]
    include_dirs = ['/usr/include']







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