[SciPy-user] scipy.test fails: clapack module is empty (Bryan Keith)

Bryan Keith bryan@ideotrope....
Thu Sep 11 16:33:58 CDT 2008


Bernardo,

I have no idea what to do about this error.  I was hoping someone on this
list might be able to help...

Bryan

> Hi Bryan Keith,
>>    8. scipy.test fails: clapack module is empty (Bryan Keith)
>>
> I've got the same error with my installation (opensuse11 via yast ---
> science repository), please have a look at the message below. I also
> have a "Illegal Instruction" error in the end of the test, which is
> worse than your problem. I would like to get rid off this. Any
> suggestions?
>
> Thanks!
>
> --------------------------
> In [1]: import scipy
>
> In [2]: scipy.test()
> Failed importing scipy.linsolve.umfpack: 'module' object has no
> attribute 'umfpack'
> Found 9/9 tests for scipy.cluster.tests.test_vq
> Found 20/20 tests for scipy.fftpack.tests.test_pseudo_diffs
> Found 4/4 tests for scipy.fftpack.tests.test_helper
> Found 18/18 tests for scipy.fftpack.tests.test_basic
> Found 1/1 tests for scipy.integrate.tests.test_integrate
> Found 3/3 tests for scipy.integrate.tests.test_quadrature
> Found 10/10 tests for scipy.integrate.tests.test_quadpack
> Found 6/6 tests for scipy.tests.test_fitpack
> Found 6/6 tests for scipy.tests.test_interpolate
> Found 28/28 tests for scipy.io.tests.test_mio
> Found 4/4 tests for scipy.io.tests.test_recaster
> Found 5/5 tests for scipy.io.tests.test_npfile
> Found 13/13 tests for scipy.io.tests.test_mmio
> Found 4/4 tests for scipy.io.tests.test_array_import
> Found 16/16 tests for scipy.lib.blas.tests.test_blas
> Found 128/128 tests for scipy.lib.blas.tests.test_fblas
>
> ****************************************************************
> WARNING: clapack module is empty
> -----------
> See scipy/INSTALL.txt for troubleshooting.
> Notes:
> * If atlas library is not found by numpy/distutils/system_info.py,
> then scipy uses flapack instead of clapack.
> ****************************************************************
>
> Found 42/42 tests for scipy.lib.lapack.tests.test_lapack
> Found 4/4 tests for scipy.linalg.tests.test_lapack
> <module 'scipy.linalg.fblas' from
> '/usr/lib64/python2.5/site-packages/scipy/linalg/fblas.so'>
> Found 16/16 tests for scipy.linalg.tests.test_blas
> Found 6/6 tests for scipy.linalg.tests.test_iterative
> Found 41/41 tests for scipy.linalg.tests.test_basic
> Found 128/128 tests for scipy.linalg.tests.test_fblas
> Found 7/7 tests for scipy.linalg.tests.test_matfuncs
> Found 72/72 tests for scipy.linalg.tests.test_decomp
> Failed importing
> /usr/lib64/python2.5/site-packages/scipy/linsolve/umfpack/tests/test_umfpack.py:
> 'module' object has no attribute 'umfpack'
> Found 2/2 tests for scipy.maxentropy.tests.test_maxentropy
> Found 3/3 tests for scipy.misc.tests.test_pilutil
> Found 399/399 tests for scipy.ndimage.tests.test_ndimage
> Found 5/5 tests for scipy.odr.tests.test_odr
> Found 4/4 tests for scipy.optimize.tests.test_zeros
> Found 1/1 tests for scipy.optimize.tests.test_cobyla
> Found 8/8 tests for scipy.optimize.tests.test_optimize
> Found 10/10 tests for scipy.optimize.tests.test_nonlin
> Found 5/5 tests for scipy.signal.tests.test_signaltools
> Found 4/4 tests for scipy.signal.tests.test_wavelets
> Found 152/152 tests for scipy.sparse.tests.test_sparse
> Found 3/3 tests for scipy.special.tests.test_spfun_stats
> Found 342/342 tests for scipy.special.tests.test_basic
> Found 10/10 tests for scipy.stats.tests.test_morestats
> Found 107/107 tests for scipy.stats.tests.test_stats
> Found 73/73 tests for scipy.stats.tests.test_distributions
> Found 0/0 tests for scipy.weave.tests.test_c_spec
> Found 1/1 tests for scipy.weave.tests.test_ast_tools
> Found 9/9 tests for scipy.weave.tests.test_build_tools
> Found 2/2 tests for scipy.weave.tests.test_blitz_tools
> building extensions here: /home/rocha/.python25_compiled/m11
> Found 1/1 tests for scipy.weave.tests.test_ext_tools
> Found 0/0 tests for scipy.weave.tests.test_inline_tools
> Found 26/26 tests for scipy.weave.tests.test_catalog
> Found 0/0 tests for scipy.weave.tests.test_scxx_sequence
> Found 74/74 tests for scipy.weave.tests.test_size_check
> Failed importing
> /usr/lib64/python2.5/site-packages/scipy/weave/tests/old_test_wx_spec.py:
> Could not locate wxPython base directory.
> Found 0/0 tests for scipy.weave.tests.test_scxx_dict
> Found 0/0 tests for scipy.weave.tests.test_scxx_object
> Found 3/3 tests for scipy.weave.tests.test_standard_array_spec
> Found 16/16 tests for scipy.weave.tests.test_slice_handler
> Failed importing
> /usr/lib64/python2.5/site-packages/scipy/weave/tests/test_wx_spec.py:
> Could not locate wxPython base directory.
> ../usr/lib64/python2.5/site-packages/scipy/cluster/vq.py:477:
> UserWarning: One of the clusters is empty. Re-run kmean with a different
> initialization.
> warnings.warn("One of the clusters is empty. "
> exception raised as expected: One of the clusters is empty. Re-run kmean
> with a different initialization.
> ..........Illegal instruction
>
> Bernardo M. Rocha
>
>
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