[SciPy-User] compiling scipy with pgcc 9.0-3 on cray linux 2.2

Jeremy Van Cleve jeremy.vancleve@gmail....
Thu Nov 19 18:35:58 CST 2009


I am trying to compile scipy 0.7.0 on the cray linux 2.2 nodes on the 
NICS kraken system. I've successfully built lapack, ATLAS, python 2.6.4, 
and numpy 1.3.0 but am having problems with scipy. Running "python 
setup.py install" in the scipy source directory yields the following error:

...
compiling C sources
C compiler: cc -DNDEBUG -fastsse -fPIC

creating build/temp.linux-x86_64-2.6/build
creating build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6
creating build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy
creating 
build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy/fftpack
compile options: '-Ibuild/src.linux-x86_64-2.6 
-I/lustre/scratch/jvanclev/opt/lib/python2.6/site-packages/numpy/core/include 
-I/lustre/scratch/jvanclev/opt/include/python2.6 -c'
cc: build/src.linux-x86_64-2.6/fortranobject.c
/opt/cray/xt-asyncpe/3.3/bin/cc: INFO: linux target is being used
cc: scipy/fftpack/src/zfftnd.c
/opt/cray/xt-asyncpe/3.3/bin/cc: INFO: linux target is being used
PGC-W-0156-Type not specified, 'int' assumed 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0039-Use of undeclared variable caches_zfftnd_fftpack 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0095-Type cast required for this conversion 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0155-Pointer value created from a nonlong integral type 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0095-Type cast required for this conversion 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0155-Pointer value created from a nonlong integral type 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0095-Type cast required for this conversion 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0095-Type cast required for this conversion 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0095-Type cast required for this conversion 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0155-Pointer value created from a nonlong integral type 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0095-Type cast required for this conversion 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-W-0155-Pointer value created from a nonlong integral type 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0054-Subscript operator ([]) applied to non-array 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-S-0059-Struct or union required on left of . or -> 
(scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC-F-0008-Error limit exceeded (scipy/fftpack/src/zfftnd_fftpack.c: 21)
PGC/x86-64 Linux 9.0-3: compilation aborted
...

I was unable to find any information on a problem in scipy with this 
source file, so I was wondering whether there might be something 
specific to compiling with pgcc. Any thoughts?

Thanks!

best,

Jeremy


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