[SciPy-User] site.cfg problems : scipy can't find BLAS

John Reid j.reid@mail.cryst.bbk.ac...
Mon Apr 12 10:12:20 CDT 2010


Thanks for the help Patrick, Minh-Tri, Josef and David.

I can get scipy compiled but its still failing the tests. When I run 
with verbose=10 I can identify the test it is running:

<snip>....
Check that complex objects don't need to be completely aligned ... ok
test_decomp.test_lapack_misaligned(<function eig at 0xb38f7d14>, 
(array([[  1.73394741e-255,   8.18880997e-217,   4.02522535e-178, ... ok
test_decomp.test_lapack_misaligned(<function eigvals at 0xb38f7df4>, 
(array([[  1.73394741e-255,   8.18880997e-217,   4.02522535e-178, ... ok
test_decomp.test_lapack_misaligned(<function lu at 0xb38f7f44>, 
(array([[  1.73394741e-255,   8.18880997e-217,   4.02522535e-178, ... ok
test_decomp.test_lapack_misaligned(<function lu_factor at 0xb38f7ed4>, 
(array([[  1.73394741e-255,   8.18880997e-217,   4.02522535e-178, ... ok
test_decomp.test_lapack_misaligned(<function lu_solve at 0xb390b33c>, 
((array([[ -1.64308767e+289,   3.52371971e-294,   1.73394741e-255, ... ok
test_decomp.test_lapack_misaligned(<function solve at 0xb390b3ac>, 
(array([[  1.73394741e-255,   8.18880997e-217,   4.02522535e-178, ... ERROR
test_decomp.test_lapack_misaligned(<function svd at 0xb38f7f7c>, 
(array([[ 1.,  0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.], ... ok
test_decomp.test_lapack_misaligned(<function svd at 0xb38f7f7c>, 
(array([[ 0,  1,  2,  3,  4,  5,  6,  7,  8,  9], ... ok
test_decomp.test_lapack_misaligned(<function svd at 0xb38f7f7c>, 
(array([[  1.73394741e-255,   8.18880997e-217,   4.02522535e-178, ... ok
test_decomp.test_lapack_misaligned(<function svdvals at 0xb38f7fb4>, 
(array([[  1.73394741e-255,   8.18880997e-217,   4.02522535e-178, ... ok
test_decomp.test_lapack_misaligned(<function svdvals at 0xb38f7fb4>, 
(array([[  1.73394741e-255,   8.18880997e-217,   4.02522535e-178, ... ok
test_decomp.test_lapack_misaligned(<function cholesky at 0xb390b064>, 
(array([[ 1.,  0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.], ...
Program received signal SIGSEGV, Segmentation fault.
[Switching to Thread -1210173776 (LWP 12789)]
0xb44a67f0 in chroot () from /usr/local/lib/libgoto2_opteronp-r1.13.so




I get the following stacktrace from gdb:

Program received signal SIGSEGV, Segmentation fault.
[Switching to Thread -1210566992 (LWP 12757)]
0xb44467f0 in chroot () from /usr/local/lib/libgoto2_opteronp-r1.13.so
(gdb) bt
#0  0xb44467f0 in chroot () from /usr/local/lib/libgoto2_opteronp-r1.13.so
#1  0xb48b7cdc in chroot () from /usr/local/lib/libgoto2_opteronp-r1.13.so
#2  0x00000002 in ?? ()
#3  0x09014af4 in ?? ()
#4  0xb411c6e3 in ddot_ () from /usr/local/lib/libgoto2_opteronp-r1.13.so
#5  0xb19827f2 in dpotf2_ () from 
/usr/local/lib/python2.5/site-packages/scipy/linalg/flapack.so
#6  0xb1983173 in dpotrf_ () from 
/usr/local/lib/python2.5/site-packages/scipy/linalg/flapack.so
#7  0xb18da338 in f2py_rout_flapack_dpotrf (capi_self=0xb409a488, 
capi_args=0xaf27bb6c,
     capi_keywds=0xaf28ea44, f2py_func=0xb1982d70 <dpotrf_>)
     at 
build/src.linux-i686-2.5/build/src.linux-i686-2.5/scipy/linalg/flapackmodule.c:13235
#8  0xb18f2951 in fortran_call (fp=0x2, arg=0xaf27bb6c, kw=0xaf28ea44)
     at build/src.linux-i686-2.5/fortranobject.c:346
#9  0x0805a427 in PyObject_Call (func=0x2, arg=0xaf27bb6c, 
kw=0xaf28ea44) at Objects/abstract.c:1861
#10 0x080c114a in PyEval_EvalFrameEx (f=0x8ff934c, throwflag=0) at 
Python/ceval.c:3784
#11 0x080c7265 in PyEval_EvalCodeEx (co=0xb4097c80, globals=0xb40a0b54, 
locals=0x0, args=0xaf27bab8,
     argcount=1, kws=0x8fbadd8, kwcount=1, defs=0xb40a6ef8, defcount=2, 
closure=0x0) at Python/ceval.c:2836
#12 0x0810e456 in function_call (func=0xb40ac064, arg=0xaf27baac, 
kw=0xaf28e68c)
     at Objects/funcobject.c:517
#13 0x0805a427 in PyObject_Call (func=0x2, arg=0xaf27baac, 
kw=0xaf28e68c) at Objects/abstract.c:1861
#14 0x080c4168 in PyEval_EvalFrameEx (f=0x900ebc4, throwflag=0) at 
Python/ceval.c:3853
#15 0x080c7265 in PyEval_EvalCodeEx (co=0xb0dd6140, globals=0xb0dc2cec, 
locals=0x0, args=0xb0d01268,
     argcount=3, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#16 0x0810e381 in function_call (func=0xafcb24c4, arg=0xb0d0125c, 
kw=0x0) at Objects/funcobject.c:517
#17 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0d0125c, kw=0x0) at 
Objects/abstract.c:1861
#18 0x080c4168 in PyEval_EvalFrameEx (f=0x8d06514, throwflag=0) at 
Python/ceval.c:3853
#19 0x080c5d9c in PyEval_EvalFrameEx (f=0x8f612bc, throwflag=0) at 
Python/ceval.c:3659
#20 0x080c7265 in PyEval_EvalCodeEx (co=0xb7ae3920, globals=0xb7ae257c, 
locals=0x0, args=0xafc9f998,
     argcount=2, kws=0x8d17938, kwcount=0, defs=0xb7af0798, defcount=1, 
closure=0x0) at Python/ceval.c:2836
#21 0x0810e456 in function_call (func=0xb7aedbfc, arg=0xafc9f98c, 
kw=0xaf2b2f0c)
     at Objects/funcobject.c:517
#22 0x0805a427 in PyObject_Call (func=0x2, arg=0xafc9f98c, 
kw=0xaf2b2f0c) at Objects/abstract.c:1861
#23 0x080c4168 in PyEval_EvalFrameEx (f=0x8f61154, throwflag=0) at 
Python/ceval.c:3853
#24 0x080c7265 in PyEval_EvalCodeEx (co=0xb7ae3968, globals=0xb7ae257c, 
locals=0x0, args=0xafc9eef8,
     argcount=2, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#25 0x0810e381 in function_call (func=0xb7aedc34, arg=0xafc9eeec, 
kw=0x0) at Objects/funcobject.c:517
#26 0x0805a427 in PyObject_Call (func=0x2, arg=0xafc9eeec, kw=0x0) at 
Objects/abstract.c:1861
#27 0x08060557 in instancemethod_call (func=0xb7aedc34, arg=0xafc9eeec, 
kw=0x0)
     at Objects/classobject.c:2519
#28 0x0805a427 in PyObject_Call (func=0x2, arg=0xaf27b84c, kw=0x0) at 
Objects/abstract.c:1861
#29 0x0809a290 in slot_tp_call (self=0xaf27b5ec, args=0xaf27b84c, 
kwds=0x0) at Objects/typeobject.c:4714
#30 0x0805a427 in PyObject_Call (func=0x2, arg=0xaf27b84c, kw=0x0) at 
Objects/abstract.c:1861
#31 0x080c114a in PyEval_EvalFrameEx (f=0x8f60fec, throwflag=0) at 
Python/ceval.c:3784
#32 0x080c5d9c in PyEval_EvalFrameEx (f=0x8f60e6c, throwflag=0) at 
Python/ceval.c:3659
#33 0x080c7265 in PyEval_EvalCodeEx (co=0xb736ab60, globals=0xb738a13c, 
locals=0x0, args=0xafcc96b8,
     argcount=2, kws=0x8ec68e0, kwcount=0, defs=0x0, defcount=0, 
closure=0x0) at Python/ceval.c:2836
#34 0x0810e456 in function_call (func=0xb7381994, arg=0xafcc96ac, 
kw=0xaf2b2dfc)
     at Objects/funcobject.c:517
#35 0x0805a427 in PyObject_Call (func=0x2, arg=0xafcc96ac, 
kw=0xaf2b2dfc) at Objects/abstract.c:1861
#36 0x080c4168 in PyEval_EvalFrameEx (f=0x8f60d04, throwflag=0) at 
Python/ceval.c:3853
#37 0x080c7265 in PyEval_EvalCodeEx (co=0xb736a7b8, globals=0xb738a13c, 
locals=0x0, args=0xafc9e298,
---Type <return> to continue, or q <return> to quit---
     argcount=2, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#38 0x0810e381 in function_call (func=0xb738179c, arg=0xafc9e28c, 
kw=0x0) at Objects/funcobject.c:517
#39 0x0805a427 in PyObject_Call (func=0x2, arg=0xafc9e28c, kw=0x0) at 
Objects/abstract.c:1861
#40 0x08060557 in instancemethod_call (func=0xb738179c, arg=0xafc9e28c, 
kw=0x0)
     at Objects/classobject.c:2519
#41 0x0805a427 in PyObject_Call (func=0x2, arg=0xb3d0cb8c, kw=0x0) at 
Objects/abstract.c:1861
#42 0x0809a290 in slot_tp_call (self=0xaf2b1e2c, args=0xb3d0cb8c, 
kwds=0x0) at Objects/typeobject.c:4714
#43 0x0805a427 in PyObject_Call (func=0x2, arg=0xb3d0cb8c, kw=0x0) at 
Objects/abstract.c:1861
#44 0x080c114a in PyEval_EvalFrameEx (f=0x8ff72cc, throwflag=0) at 
Python/ceval.c:3784
#45 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383f50, globals=0xb737bbdc, 
locals=0x0, args=0xaf3f3438,
     argcount=2, kws=0x8edd848, kwcount=0, defs=0x0, defcount=0, 
closure=0x0) at Python/ceval.c:2836
#46 0x0810e456 in function_call (func=0xb73944c4, arg=0xaf3f342c, 
kw=0xaf2b2934)
     at Objects/funcobject.c:517
#47 0x0805a427 in PyObject_Call (func=0x2, arg=0xaf3f342c, 
kw=0xaf2b2934) at Objects/abstract.c:1861
#48 0x080c4168 in PyEval_EvalFrameEx (f=0x8fcc724, throwflag=0) at 
Python/ceval.c:3853
#49 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383e30, globals=0xb737bbdc, 
locals=0x0, args=0xafc9ef18,
     argcount=2, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#50 0x0810e381 in function_call (func=0xb739441c, arg=0xafc9ef0c, 
kw=0x0) at Objects/funcobject.c:517
#51 0x0805a427 in PyObject_Call (func=0x2, arg=0xafc9ef0c, kw=0x0) at 
Objects/abstract.c:1861
#52 0x08060557 in instancemethod_call (func=0xb739441c, arg=0xafc9ef0c, 
kw=0x0)
     at Objects/classobject.c:2519
#53 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0dc644c, kw=0x0) at 
Objects/abstract.c:1861
#54 0x0809a290 in slot_tp_call (self=0xb0dc6dac, args=0xb0dc644c, 
kwds=0x0) at Objects/typeobject.c:4714
#55 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0dc644c, kw=0x0) at 
Objects/abstract.c:1861
#56 0x080c114a in PyEval_EvalFrameEx (f=0x8f76034, throwflag=0) at 
Python/ceval.c:3784
#57 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383f50, globals=0xb737bbdc, 
locals=0x0, args=0xafc9fc78,
     argcount=2, kws=0x8d17910, kwcount=0, defs=0x0, defcount=0, 
closure=0x0) at Python/ceval.c:2836
#58 0x0810e456 in function_call (func=0xb73944c4, arg=0xafc9fc6c, 
kw=0xb0dc03e4)
     at Objects/funcobject.c:517
#59 0x0805a427 in PyObject_Call (func=0x2, arg=0xafc9fc6c, 
kw=0xb0dc03e4) at Objects/abstract.c:1861
#60 0x080c4168 in PyEval_EvalFrameEx (f=0x8f89d0c, throwflag=0) at 
Python/ceval.c:3853
#61 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383e30, globals=0xb737bbdc, 
locals=0x0, args=0xafc9fc58,
     argcount=2, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#62 0x0810e381 in function_call (func=0xb739441c, arg=0xafc9fc4c, 
kw=0x0) at Objects/funcobject.c:517
#63 0x0805a427 in PyObject_Call (func=0x2, arg=0xafc9fc4c, kw=0x0) at 
Objects/abstract.c:1861
#64 0x08060557 in instancemethod_call (func=0xb739441c, arg=0xafc9fc4c, 
kw=0x0)
     at Objects/classobject.c:2519
#65 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0dc62ec, kw=0x0) at 
Objects/abstract.c:1861
#66 0x0809a290 in slot_tp_call (self=0xb0dc6e2c, args=0xb0dc62ec, 
kwds=0x0) at Objects/typeobject.c:4714
#67 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0dc62ec, kw=0x0) at 
Objects/abstract.c:1861
#68 0x080c114a in PyEval_EvalFrameEx (f=0x8f1f26c, throwflag=0) at 
Python/ceval.c:3784
#69 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383f50, globals=0xb737bbdc, 
locals=0x0, args=0xb0e92138,
     argcount=2, kws=0x8e6e080, kwcount=0, defs=0x0, defcount=0, 
closure=0x0) at Python/ceval.c:2836
#70 0x0810e456 in function_call (func=0xb73944c4, arg=0xb0e9212c, 
kw=0xaf4552d4)
     at Objects/funcobject.c:517
#71 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0e9212c, 
kw=0xaf4552d4) at Objects/abstract.c:1861
#72 0x080c4168 in PyEval_EvalFrameEx (f=0x8d7ecbc, throwflag=0) at 
Python/ceval.c:3853
#73 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383e30, globals=0xb737bbdc, 
locals=0x0, args=0xb0e7fa18,
     argcount=2, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#74 0x0810e381 in function_call (func=0xb739441c, arg=0xb0e7fa0c, 
kw=0x0) at Objects/funcobject.c:517
---Type <return> to continue, or q <return> to quit---
#75 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0e7fa0c, kw=0x0) at 
Objects/abstract.c:1861
#76 0x08060557 in instancemethod_call (func=0xb739441c, arg=0xb0e7fa0c, 
kw=0x0)
     at Objects/classobject.c:2519
#77 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0cf21cc, kw=0x0) at 
Objects/abstract.c:1861
#78 0x0809a290 in slot_tp_call (self=0xb3e95c4c, args=0xb0cf21cc, 
kwds=0x0) at Objects/typeobject.c:4714
#79 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0cf21cc, kw=0x0) at 
Objects/abstract.c:1861
#80 0x080c114a in PyEval_EvalFrameEx (f=0x8f6bacc, throwflag=0) at 
Python/ceval.c:3784
#81 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383f50, globals=0xb737bbdc, 
locals=0x0, args=0xb0e7fa38,
     argcount=2, kws=0x8b765d0, kwcount=0, defs=0x0, defcount=0, 
closure=0x0) at Python/ceval.c:2836
#82 0x0810e456 in function_call (func=0xb73944c4, arg=0xb0e7fa2c, 
kw=0xafcbaf0c)
     at Objects/funcobject.c:517
#83 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0e7fa2c, 
kw=0xafcbaf0c) at Objects/abstract.c:1861
#84 0x080c4168 in PyEval_EvalFrameEx (f=0x8f5e7ac, throwflag=0) at 
Python/ceval.c:3853
#85 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383e30, globals=0xb737bbdc, 
locals=0x0, args=0xb0e68e78,
     argcount=2, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#86 0x0810e381 in function_call (func=0xb739441c, arg=0xb0e68e6c, 
kw=0x0) at Objects/funcobject.c:517
#87 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0e68e6c, kw=0x0) at 
Objects/abstract.c:1861
#88 0x08060557 in instancemethod_call (func=0xb739441c, arg=0xb0e68e6c, 
kw=0x0)
     at Objects/classobject.c:2519
#89 0x0805a427 in PyObject_Call (func=0x2, arg=0xb11aa06c, kw=0x0) at 
Objects/abstract.c:1861
#90 0x0809a290 in slot_tp_call (self=0xb40addcc, args=0xb11aa06c, 
kwds=0x0) at Objects/typeobject.c:4714
#91 0x0805a427 in PyObject_Call (func=0x2, arg=0xb11aa06c, kw=0x0) at 
Objects/abstract.c:1861
#92 0x080c114a in PyEval_EvalFrameEx (f=0x8ce4d1c, throwflag=0) at 
Python/ceval.c:3784
#93 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383f50, globals=0xb737bbdc, 
locals=0x0, args=0xb0ed1858,
     argcount=2, kws=0x89f4c90, kwcount=0, defs=0x0, defcount=0, 
closure=0x0) at Python/ceval.c:2836
#94 0x0810e456 in function_call (func=0xb73944c4, arg=0xb0ed184c, 
kw=0xb0e9c4f4)
     at Objects/funcobject.c:517
#95 0x0805a427 in PyObject_Call (func=0x2, arg=0xb0ed184c, 
kw=0xb0e9c4f4) at Objects/abstract.c:1861
#96 0x080c4168 in PyEval_EvalFrameEx (f=0x8ce4bb4, throwflag=0) at 
Python/ceval.c:3853
#97 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383e30, globals=0xb737bbdc, 
locals=0x0, args=0xb11db6f8,
     argcount=2, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#98 0x0810e381 in function_call (func=0xb739441c, arg=0xb11db6ec, 
kw=0x0) at Objects/funcobject.c:517
#99 0x0805a427 in PyObject_Call (func=0x2, arg=0xb11db6ec, kw=0x0) at 
Objects/abstract.c:1861
#100 0x08060557 in instancemethod_call (func=0xb739441c, arg=0xb11db6ec, 
kw=0x0)
     at Objects/classobject.c:2519
#101 0x0805a427 in PyObject_Call (func=0x2, arg=0xb3ec55ac, kw=0x0) at 
Objects/abstract.c:1861
#102 0x0809a290 in slot_tp_call (self=0xb741c98c, args=0xb3ec55ac, 
kwds=0x0) at Objects/typeobject.c:4714
#103 0x0805a427 in PyObject_Call (func=0x2, arg=0xb3ec55ac, kw=0x0) at 
Objects/abstract.c:1861
#104 0x080c114a in PyEval_EvalFrameEx (f=0x8ce4434, throwflag=0) at 
Python/ceval.c:3784
#105 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383f50, globals=0xb737bbdc, 
locals=0x0, args=0xb3d347f8,
     argcount=2, kws=0x84e8b60, kwcount=0, defs=0x0, defcount=0, 
closure=0x0) at Python/ceval.c:2836
#106 0x0810e456 in function_call (func=0xb73944c4, arg=0xb3d347ec, 
kw=0xb0e9c2d4)
     at Objects/funcobject.c:517
#107 0x0805a427 in PyObject_Call (func=0x2, arg=0xb3d347ec, 
kw=0xb0e9c2d4) at Objects/abstract.c:1861
#108 0x080c4168 in PyEval_EvalFrameEx (f=0x8aef9ac, throwflag=0) at 
Python/ceval.c:3853
#109 0x080c7265 in PyEval_EvalCodeEx (co=0xb7383e30, globals=0xb737bbdc, 
locals=0x0, args=0xb741c378,
     argcount=2, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#110 0x0810e381 in function_call (func=0xb739441c, arg=0xb741c36c, 
kw=0x0) at Objects/funcobject.c:517
#111 0x0805a427 in PyObject_Call (func=0x2, arg=0xb741c36c, kw=0x0) at 
Objects/abstract.c:1861
#112 0x08060557 in instancemethod_call (func=0xb739441c, arg=0xb741c36c, 
kw=0x0)
---Type <return> to continue, or q <return> to quit---
     at Objects/classobject.c:2519
#113 0x0805a427 in PyObject_Call (func=0x2, arg=0xb740dfac, kw=0x0) at 
Objects/abstract.c:1861
#114 0x0809a290 in slot_tp_call (self=0xb741ce2c, args=0xb740dfac, 
kwds=0x0) at Objects/typeobject.c:4714
#115 0x0805a427 in PyObject_Call (func=0x2, arg=0xb740dfac, kw=0x0) at 
Objects/abstract.c:1861
#116 0x080c114a in PyEval_EvalFrameEx (f=0x8c30d54, throwflag=0) at 
Python/ceval.c:3784
#117 0x080c5d9c in PyEval_EvalFrameEx (f=0x85274c4, throwflag=0) at 
Python/ceval.c:3659
#118 0x080c5d9c in PyEval_EvalFrameEx (f=0x8505154, throwflag=0) at 
Python/ceval.c:3659
#119 0x080c7265 in PyEval_EvalCodeEx (co=0xb7ae8de8, globals=0xb7ae257c, 
locals=0x0, args=0xb74c2b98,
     argcount=1, kws=0x84355c8, kwcount=5, defs=0xb7baee48, defcount=5, 
closure=0x0) at Python/ceval.c:2836
#120 0x0810e456 in function_call (func=0xb7af279c, arg=0xb74c2b8c, 
kw=0xb741668c)
     at Objects/funcobject.c:517
#121 0x0805a427 in PyObject_Call (func=0x2, arg=0xb74c2b8c, 
kw=0xb741668c) at Objects/abstract.c:1861
#122 0x08060557 in instancemethod_call (func=0xb7af279c, arg=0xb74c2b8c, 
kw=0xb741668c)
     at Objects/classobject.c:2519
#123 0x0805a427 in PyObject_Call (func=0x2, arg=0xb74c2b8c, 
kw=0xb741668c) at Objects/abstract.c:1861
#124 0x080c4168 in PyEval_EvalFrameEx (f=0x84901b4, throwflag=0) at 
Python/ceval.c:3853
#125 0x080c7265 in PyEval_EvalCodeEx (co=0xb76b32f0, globals=0xb76b924c, 
locals=0x0, args=0xb7cd82d8,
     argcount=1, kws=0x84d71a0, kwcount=3, defs=0xb738dfb0, defcount=11, 
closure=0x0) at Python/ceval.c:2836
#126 0x0810e456 in function_call (func=0xb739310c, arg=0xb7cd82cc, 
kw=0xb74163e4)
     at Objects/funcobject.c:517
#127 0x0805a427 in PyObject_Call (func=0x2, arg=0xb7cd82cc, 
kw=0xb74163e4) at Objects/abstract.c:1861
#128 0x08060557 in instancemethod_call (func=0xb739310c, arg=0xb7cd82cc, 
kw=0xb74163e4)
     at Objects/classobject.c:2519
#129 0x0805a427 in PyObject_Call (func=0x2, arg=0xb7d4302c, 
kw=0xb74163e4) at Objects/abstract.c:1861
#130 0x08099f1b in slot_tp_init (self=0xb741048c, args=0xb7d4302c, 
kwds=0xb74163e4)
     at Objects/typeobject.c:4943
#131 0x0809c9a3 in type_call (type=0x8510464, args=0xb7d4302c, 
kwds=0xb74163e4) at Objects/typeobject.c:436
#132 0x0805a427 in PyObject_Call (func=0x2, arg=0xb7d4302c, 
kw=0xb74163e4) at Objects/abstract.c:1861
#133 0x080c114a in PyEval_EvalFrameEx (f=0x83e2ff4, throwflag=0) at 
Python/ceval.c:3784
#134 0x080c7265 in PyEval_EvalCodeEx (co=0xb7b01020, globals=0xb7afb2d4, 
locals=0x0, args=0x81d5a5c,
     argcount=1, kws=0x81d5a60, kwcount=0, defs=0xb7b02128, defcount=5, 
closure=0x0) at Python/ceval.c:2836
#135 0x080c55f5 in PyEval_EvalFrameEx (f=0x81d5924, throwflag=0) at 
Python/ceval.c:3669
#136 0x080c7265 in PyEval_EvalCodeEx (co=0xb7d08d10, globals=0xb7d5cacc, 
locals=0xb7d5cacc, args=0x0,
     argcount=0, kws=0x0, kwcount=0, defs=0x0, defcount=0, closure=0x0) 
at Python/ceval.c:2836
#137 0x080c72d7 in PyEval_EvalCode (co=0xb7d08d10, globals=0xb7d5cacc, 
locals=0xb7d5cacc)
     at Python/ceval.c:494
#138 0x080e6cd2 in PyRun_StringFlags (
     str=0x8166008 "import scipy as M; print M.__version__, M.__file__; 
M.test()\n", start=257,
     globals=0xb7d5cacc, locals=0xb7d5cacc, flags=0xbf9b4d68) at 
Python/pythonrun.c:1273
#139 0x080e6d95 in PyRun_SimpleStringFlags (
     command=0x8166008 "import scipy as M; print M.__version__, 
M.__file__; M.test()\n", flags=0xbf9b4d68)
     at Python/pythonrun.c:900
#140 0x0805687e in Py_Main (argc=1, argv=0xbf9b4e34) at Modules/main.c:512
#141 0x08056382 in main (argc=Cannot access memory at address 0x2
) at ./Modules/python.c:23


I'm not sure how to debug this. GotoBLAS2 passes some tests when I make 
it. However when I run its lapack-test target it fails. Can anyone here 
tell me anything I can do to check if the problem is with my build of 
scipy or GotoBLAS?

Thanks,
John.



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