[SciPy-User] fisher's exact.py stalls?

Pete Shepard peter.shepard@gmail....
Sat Jan 2 18:10:58 CST 2010


That did the trick, thanks.

On Sat, Jan 2, 2010 at 3:42 PM, <josef.pktd@gmail.com> wrote:

> On Sat, Jan 2, 2010 at 6:16 PM, Pete Shepard <peter.shepard@gmail.com>
> wrote:
> > Hello,
> >
> > I am using "fishersexact.py" to compare two long ~10,000 lists of ratios.
> > Each time I do this, the program get stuck? I can print the two ratios
> that
> > come before the program stalls and if I give these numbers directly to
> the
> > subroutine it seems to process them just fine. I am wondering if anyone
> has
> > had a similar issue with  the "fishersexact.py" subroutine?
>
> Do you mean fisherexact in the scipy trac ?
>
> If yest, did you apply
> http://projects.scipy.org/scipy/ticket/956#comment:10  by tkharris
> which found and fixes one endless loop.
>
> I was working on the ticket, but got stuck with some test failures
> that I haven't figured out.
>
> Do you know for which table the function gets stuck?
>
> Josef
>
>
> >
> > Thanks,
> >
> >
> >
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> >
> >
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