[SciPy-User] installation missing files, ICC compiler

gintare statkute g.statkute@gmail....
Fri Jun 25 15:01:56 CDT 2010


Hello,

I am not able to install ATLAS.

1) My computer has no ICC compiler and The ICC compiler from Intel seems too
modern for my proccesor acording description.
I try to use gcc-4.2 instead of ICC
*
working:/usr/ATLAS#  /opt/pages/ATLAS/configure -b 64
--prefix=/opt/pages/ATLAS -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg
-fPIC --with-netlib-lapack=$/opt/lapack-3.1.1/lapack_LINUX.a *

I am getting error:

*working:/usr/ATLAS#  /opt/pages/ATLAS/configure -b 64
--prefix=/opt/pages/ATLAS -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg
-fPIC --with-netlib-lapack=$/opt/lapack-3.1.1/lapack_LINUX.a *

2) Another error is about missing files:
*/usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or
directory
*



Full code:
*working:/usr/ATLAS#  /opt/pages/ATLAS/configure -b 64
--prefix=/opt/pages/ATLAS -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg
-fPIC --with-netlib-lapack=$/opt/lapack-3.1.1/lapack_LINUX.a
make: `xconfig' is up to date.
./xconfig -d s /opt/pages/ATLAS/ -d b /usr/ATLAS  -b 64 -Ss kern
/usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg -fPIC -Si lapackref 1

OS configured as Linux (1)

Assembly configured as GAS_x8632 (1)

Vector ISA Extension configured as  SSE3 (2,28)

Architecture configured as  Core2 (15)

Clock rate configured as 1667Mhz

Maximum number of threads configured as  2
Parallel make command configured as '$(MAKE) -j 2'
Cannot detect CPU throttling.
rm -f config1.out
make atlas_run atldir=/usr/ATLAS exe=xprobe_comp args="-v 0 -o atlconf.txt
-O 1 -A 15 -Si nof77 0  -C ic 'gcc-4.2' -Fa ic '-fPIC' -C sm
'/usr/bin/gcc-4.2' -Fa sm '-fPIC' -C dm '/usr/bin/gcc-4.2' -Fa dm '-fPIC' -C
sk '/usr/bin/gcc-4.2' -Fa sk '-fPIC' -C dk '/usr/bin/gcc-4.2' -Fa dk '-fPIC'
-Fa xc '-fPIC' -Fa if '-fPIC'  -b 64" \
                redir=config1.out
make[1]: Entering directory `/usr/ATLAS'
cd /usr/ATLAS ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 15 -Si nof77 0  -C
ic 'gcc-4.2' -Fa ic '-fPIC' -C sm '/usr/bin/gcc-4.2' -Fa sm '-fPIC' -C dm
'/usr/bin/gcc-4.2' -Fa dm '-fPIC' -C sk '/usr/bin/gcc-4.2' -Fa sk '-fPIC' -C
dk '/usr/bin/gcc-4.2' -Fa dk '-fPIC' -Fa xc '-fPIC' -Fa if '-fPIC'  -b 64 >
config1.out
In file included from /usr/include/features.h:354,
                 from /usr/include/stdio.h:28,
                 from /opt/pages/ATLAS//CONFIG/src/backend/comptestC.c:1:
/usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or
directory
make[2]: *** [IRunCComp] Error 1


Unable to find usable compiler for ICC; abortingMake sure compilers are in
your path, and specify good compilers to configure
(see INSTALL.txt or 'configure --help' for details)make[1]: *** [atlas_run]
Error 1
make[1]: Leaving directory `/usr/ATLAS'
make: *** [IRun_comp] Error 2
xconfig: /opt/pages/ATLAS//CONFIG/src/config.c:125: ProbeComp: Assertion
`!system(ln)' failed.
/bin/sh: line 1: 24985 Aborted                 ./xconfig -d s
/opt/pages/ATLAS/ -d b /usr/ATLAS -b 64 -Ss kern /usr/bin/gcc-4.2 -C ic
gcc-4.2 -Fa alg -fPIC -Si lapackref 1 -D c -DATL_FULL_LAPACK
xconfig exited with 134
working:/usr/ATLAS#  /opt/pages/ATLAS/configure -b 64
--prefix=/opt/pages/ATLAS -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg
-fPIC --with-netlib-lapack=$/opt/lapack-3.1.1/lapack_LINUX.a*


regards,
gintare statkute
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