[SciPy-User] numpy core failure.

John washakie@gmail....
Mon Nov 1 15:18:30 CDT 2010


A bit more information...

On one machine I found this error:
ImportError: libaf90math.so: cannot open shared object file: No such
file or directory

I don't know what this library is and I can't find much online about it.

I'm going ahead an attaching all the output from the error, but there
aren't any clear clues for me... maybe someone with keener eyes??

Thanks!

-john

On Mon, Nov 1, 2010 at 8:50 PM, John <washakie@gmail.com> wrote:
> Hello,
>
> I've been recently trying to get several boxes that I work on 'happy'.
> I'm upgrading matplotlib, numpy, scipy, basemap, and PyNGL, and PyNIO.
> I don't have administrative privileges and rely on a mounted directory
> which is in my python path. It's a headache, but tends to work. I have
> a strange problem now, however. All the machines (8 in total) are
> either Ubuntu 9.10 or Ubuntu 10.04 LTS. The point is we want the bring
> them all to 10.04, but it's causing some headaches due to libgeos-3
> libraries, and lib2c which apparently is no longer available as a dev
> package in 10.04. Okay, that's the background -- and bear in mind, it
> seems most my problems are solved with the libraries, etc.
>
> Now, however, I just ran into this. I installed numpy, and it went
> fine on one box. I went to the another box (these both happen to be
> 10.04 by the way), and I get the error below. Does anyone have any
> idea what may be causing this?!?! The error is from:
> import numpy as np
>
> during my ipython start up.
>
> Thank you,
> john
>
>
>     50 """
>     51 import re
> ---> 52 import numpy as np
>     53 from numpy import ma
>     54 import matplotlib.cbook as cbook
>
> /x/site-packages/numpy/__init__.py in <module>()
>    130         return loader(*packages, **options)
>    131
> --> 132     import add_newdocs
>    133     __all__ = ['add_newdocs']
>    134
>
> /x/site-packages/numpy/add_newdocs.py in <module>()
>      7 #       core/fromnumeric.py, core/defmatrix.py up-to-date.
>
>      8
> ----> 9 from lib import add_newdoc
>     10
>     11 ###############################################################################
>
>
> /x/site-packages/numpy/lib/__init__.py in <module>()
>     11
>     12 import scimath as emath
> ---> 13 from polynomial import *
>     14 #import convertcode
>
>     15 from utils import *
>
> /x/site-packages/numpy/lib/polynomial.py in <module>()
>      9 import re
>     10 import warnings
> ---> 11 import numpy.core.numeric as NX
>     12
>     13 from numpy.core import isscalar, abs, finfo, atleast_1d, hstack
>
> AttributeError: 'module' object has no attribute 'core'
>
> --
>
>
> Configuration
> ``````````````````````````
> Basemap: 1.0
> Matplotlib: 1.0.0
> Numpy 1.4.1 (trying)
> scipy 0.8.0
> Ubuntu 10.04
>



-- 
Configuration
``````````````````````````
Plone 2.5.3-final,
CMF-1.6.4,
Zope (Zope 2.9.7-final, python 2.4.4, linux2),
Python 2.6
PIL 1.1.6
Mailman 2.1.9
Postfix 2.4.5
Procmail v3.22 2001/09/10
Basemap: 1.0
Matplotlib: 1.0.0
-------------- next part --------------
[jfb@andy ~]$ipython -p math
/x64/site-packages/cdat/lib/python2.6/site-packages/IPython/Magic.py:38: DeprecationWarning: the sets module is deprecated
  from sets import Set
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)


/x64/site-packages/matplotlib/__init__.py in <module>()
    133 import sys, os, tempfile
    134 
--> 135 from matplotlib.rcsetup import (defaultParams,
    136                                 validate_backend,
    137                                 validate_toolbar,

/x64/site-packages/matplotlib/rcsetup.py in <module>()
     17 import warnings
     18 from matplotlib.fontconfig_pattern import parse_fontconfig_pattern
---> 19 from matplotlib.colors import is_color_like
     20 
     21 #interactive_bk = ['gtk', 'gtkagg', 'gtkcairo', 'fltkagg', 'qtagg', 'qt4agg',


/x64/site-packages/matplotlib/colors.py in <module>()
     50 """
     51 import re
---> 52 import numpy as np
     53 from numpy import ma
     54 import matplotlib.cbook as cbook

/x64/site-packages/numpy/__init__.pyc in <module>()
    130         return loader(*packages, **options)
    131
--> 132     import add_newdocs
    133     __all__ = ['add_newdocs']
    134 

/x64/site-packages/numpy/add_newdocs.py in <module>()
      7 #       core/fromnumeric.py, core/defmatrix.py up-to-date.

      8 
----> 9 from lib import add_newdoc
     10 
     11 ###############################################################################


/x64/site-packages/numpy/lib/__init__.py in <module>()
     11 
     12 import scimath as emath
---> 13 from polynomial import *
     14 #import convertcode

     15 from utils import *

/x64/site-packages/numpy/lib/polynomial.py in <module>()
     15 from numpy.lib.function_base import trim_zeros, sort_complex
     16 from numpy.lib.type_check import iscomplex, real, imag
---> 17 from numpy.linalg import eigvals, lstsq
     18 
     19 class RankWarning(UserWarning):

/x64/site-packages/numpy/linalg/__init__.py in <module>()
     45 from info import __doc__
     46 
---> 47 from linalg import *
     48 
     49 from numpy.testing import Tester

/x64/site-packages/numpy/linalg/linalg.py in <module>()
     20         isfinite, size
     21 from numpy.lib import triu
---> 22 from numpy.linalg import lapack_lite
     23 from numpy.matrixlib.defmatrix import matrix_power
     24 

ImportError: libaf90math.so: cannot open shared object file: No such file or directory
WARNING: Failure executing code: 'from matplotlib import interactive'
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)


NameError: name 'interactive' is not defined
WARNING: Failure executing code: 'interactive(True)'
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)


/x64/site-packages/numpy/__init__.py in <module>()
    130         return loader(*packages, **options)
    131 
--> 132     import add_newdocs
    133     __all__ = ['add_newdocs']
    134 

/x64/site-packages/numpy/add_newdocs.py in <module>()
      7 #       core/fromnumeric.py, core/defmatrix.py up-to-date.

      8 
----> 9 from lib import add_newdoc
     10 
     11 ###############################################################################


/x64/site-packages/numpy/lib/__init__.py in <module>()
     11 
     12 import scimath as emath
---> 13 from polynomial import *
     14 #import convertcode

     15 from utils import *

/x64/site-packages/numpy/lib/polynomial.py in <module>()
      9 import re
     10 import warnings
---> 11 import numpy.core.numeric as NX
     12 
     13 from numpy.core import isscalar, abs, finfo, atleast_1d, hstack

AttributeError: 'module' object has no attribute 'core'
WARNING: Failure executing code: 'import numpy as np'
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)


/x64/site-packages/matplotlib/__init__.py in <module>()
    133 import sys, os, tempfile
    134 
--> 135 from matplotlib.rcsetup import (defaultParams,
    136                                 validate_backend,
    137                                 validate_toolbar,

/x64/site-packages/matplotlib/rcsetup.py in <module>()
     17 import warnings
     18 from matplotlib.fontconfig_pattern import parse_fontconfig_pattern
---> 19 from matplotlib.colors import is_color_like
     20 
     21 #interactive_bk = ['gtk', 'gtkagg', 'gtkcairo', 'fltkagg', 'qtagg', 'qt4agg',


/x64/site-packages/matplotlib/colors.py in <module>()
     50 """
     51 import re
---> 52 import numpy as np
     53 from numpy import ma
     54 import matplotlib.cbook as cbook

/x64/site-packages/numpy/__init__.py in <module>()
    130         return loader(*packages, **options)
    131 
--> 132     import add_newdocs
    133     __all__ = ['add_newdocs']
    134 

/x64/site-packages/numpy/add_newdocs.py in <module>()
      7 #       core/fromnumeric.py, core/defmatrix.py up-to-date.

      8 
----> 9 from lib import add_newdoc
     10 
     11 ###############################################################################


/x64/site-packages/numpy/lib/__init__.py in <module>()
     11 
     12 import scimath as emath
---> 13 from polynomial import *
     14 #import convertcode

     15 from utils import *

/x64/site-packages/numpy/lib/polynomial.py in <module>()
      9 import re
     10 import warnings
---> 11 import numpy.core.numeric as NX
     12 
     13 from numpy.core import isscalar, abs, finfo, atleast_1d, hstack

AttributeError: 'module' object has no attribute 'core'
WARNING: Failure executing code: 'import matplotlib.pyplot as plt'
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)

     11 
     12 
---> 13 import numpy as np
     14 import math
     15 import copy

/x64/site-packages/numpy/__init__.py in <module>()
    130         return loader(*packages, **options)
    131 
--> 132     import add_newdocs
    133     __all__ = ['add_newdocs']
    134 

/x64/site-packages/numpy/add_newdocs.py in <module>()
      7 #       core/fromnumeric.py, core/defmatrix.py up-to-date.

      8 
----> 9 from lib import add_newdoc
     10 
     11 ###############################################################################


/x64/site-packages/numpy/lib/__init__.py in <module>()
     11 
     12 import scimath as emath
---> 13 from polynomial import *
     14 #import convertcode

     15 from utils import *

/x64/site-packages/numpy/lib/polynomial.py in <module>()
      9 import re
     10 import warnings
---> 11 import numpy.core.numeric as NX
     12 
     13 from numpy.core import isscalar, abs, finfo, atleast_1d, hstack

AttributeError: 'module' object has no attribute 'core'
WARNING: Failure executing code: 'import mapping as mp'
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)

/home/jfb/<string> in <module>()

/home/jfb/jxpart.py in <module>()
     64 #Dependencies:

     65 # Numpy

---> 66 import numpy as np
     67 # Matplotlib

     68 import matplotlib as mpl

/x64/site-packages/numpy/__init__.py in <module>()
    130         return loader(*packages, **options)
    131 
--> 132     import add_newdocs
    133     __all__ = ['add_newdocs']
    134 

/x64/site-packages/numpy/add_newdocs.py in <module>()
      7 #       core/fromnumeric.py, core/defmatrix.py up-to-date.

      8 
----> 9 from lib import add_newdoc
     10 
     11 ###############################################################################


/x64/site-packages/numpy/lib/__init__.py in <module>()
     11 
     12 import scimath as emath
---> 13 from polynomial import *
     14 #import convertcode

     15 from utils import *

/x64/site-packages/numpy/lib/polynomial.py in <module>()
      9 import re
     10 import warnings
---> 11 import numpy.core.numeric as NX
     12 
     13 from numpy.core import isscalar, abs, finfo, atleast_1d, hstack

AttributeError: 'module' object has no attribute 'core'
WARNING: Failure executing code: 'import pflexpart as pf'
*** math functions available globally, cmath as a module
/nilu2/home/jfb/.bashrc: 72: shopt: not found
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)

/x64/site-packages/cdat/lib/python2.6/site-packages/IPython/ipmaker.pyc in force_import(modname)
     64         reload(sys.modules[modname])
     65     else:
---> 66         __import__(modname)
     67 
     68 

/home/jfb/.ipython/ipy_user_conf.py in <module>()
    114     ip.ex('execfile("%s")' % os.path.expanduser(fname))
    115 
--> 116 main()
    117 
    118 

/home/jfb/.ipython/ipy_user_conf.py in main()
     95     # at your own risk!

     96     #impofrt ipy_greedycompleter

---> 97     from matplotlib import interactive
     98     import numpy as np
     99     import matplotlib.pyplot as plt

/x64/site-packages/matplotlib/__init__.py in <module>()
    133 import sys, os, tempfile
    134 
--> 135 from matplotlib.rcsetup import (defaultParams,
    136                                 validate_backend,
    137                                 validate_toolbar,

/x64/site-packages/matplotlib/rcsetup.py in <module>()
     17 import warnings
     18 from matplotlib.fontconfig_pattern import parse_fontconfig_pattern
---> 19 from matplotlib.colors import is_color_like
     20 
     21 #interactive_bk = ['gtk', 'gtkagg', 'gtkcairo', 'fltkagg', 'qtagg', 'qt4agg',


/x64/site-packages/matplotlib/colors.py in <module>()
     50 """
     51 import re
---> 52 import numpy as np
     53 from numpy import ma
     54 import matplotlib.cbook as cbook

/x64/site-packages/numpy/__init__.py in <module>()
    130         return loader(*packages, **options)
    131 
--> 132     import add_newdocs
    133     __all__ = ['add_newdocs']
    134 

/x64/site-packages/numpy/add_newdocs.py in <module>()
      7 #       core/fromnumeric.py, core/defmatrix.py up-to-date.

      8 
----> 9 from lib import add_newdoc
     10 
     11 ###############################################################################


/x64/site-packages/numpy/lib/__init__.py in <module>()
     11 
     12 import scimath as emath
---> 13 from polynomial import *
     14 #import convertcode

     15 from utils import *

/x64/site-packages/numpy/lib/polynomial.py in <module>()
      9 import re
     10 import warnings
---> 11 import numpy.core.numeric as NX
     12 
     13 from numpy.core import isscalar, abs, finfo, atleast_1d, hstack


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