[SciPy-User] Build Problems On SLES11SP1 64-Bit

Ralf Gommers ralf.gommers@googlemail....
Thu Oct 7 19:15:44 CDT 2010


On Thu, Oct 7, 2010 at 11:53 PM, Wempa, Kristofer
<Kristofer.Wempa@sig.com>wrote:

>  Scipy Users,
>
>
>
>             I ran into a build problem and I didn’t see this particular
> problem in the bug database or in the mailing list.  I get a build failure
> when attempting to build scipy 0.8.0 on a SLES11SP1 64-bit server.
> Previously, I’ve built scipy the exact same way on 6 different SLES10
> platforms (SP1, SP2 and SP3, both 32-bit and 64-bit).  None of those builds
> had problems.  However, on SLES11, I got the following errors:
>
>
>
> creating build/temp.linux-x86_64-2.7/scipy/sparse/sparsetools
>
> compile options:
> '-I/siglinux/tc/sles11sp1_gcc-4.3.4_x86-64/sig1/Python-2.7/lib/python2.7/site-packages/numpy/core/include
> -I/siglinux/tc/sles11sp1_gcc-4.3.4_x86-64/sig1/Python-2.7/include/python2.7
> -c'
>
> g++: scipy/sparse/sparsetools/csr_wrap.cxx
>
> scipy/sparse/sparsetools/csr_wrap.cxx: In function âint
> require_size(PyArrayObject*, npy_intp*, int)â:
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2910: error: expected `)' before
> âPRIdPTRâ
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2910: warning: spurious trailing â%â
> in format
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2910: warning: too many arguments for
> format
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2917: error: expected `)' before
> âPRIdPTRâ
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2917: warning: spurious trailing â%â
> in format
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2917: warning: too many arguments for
> format
>
> scipy/sparse/sparsetools/csr_wrap.cxx: In function âint
> require_size(PyArrayObject*, npy_intp*, int)â:
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2910: error: expected `)' before
> âPRIdPTRâ
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2910: warning: spurious trailing â%â
> in format
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2910: warning: too many arguments for
> format
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2917: error: expected `)' before
> âPRIdPTRâ
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2917: warning: spurious trailing â%â
> in format
>
> scipy/sparse/sparsetools/csr_wrap.cxx:2917: warning: too many arguments for
> format
>
> error: Command "g++ -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3
> -Wall -fPIC
> -I/siglinux/tc/sles11sp1_gcc-4.3.4_x86-64/sig1/Python-2.7/lib/python2.7/site-packages/numpy/core/include
> -I/siglinux/tc/sles11sp1_gcc-4.3.4_x86-64/sig1/Python-2.7/include/python2.7
> -c scipy/sparse/sparsetools/csr_wrap.cxx -o
> build/temp.linux-x86_64-2.7/scipy/sparse/sparsetools/csr_wrap.o" failed with
> exit status 1
>
>
>
> The commands I ran to build were:
>
>
>
> export ATLAS=/siglinux/tc/sles11sp1_gcc-4.3.4_x86-64/sig1/atlas-3.8.3/lib
>
> export ATLAS_LPATH=
> /siglinux/tc/sles11sp1_gcc-4.3.4_x86-64/sig1/atlas-3.8.3/lib
>
> export ATLAS_IPATH=`
> /siglinux/tc/sles11sp1_gcc-4.3.4_x86-64/sig1/atlas-3.8.3/include
>
> export LDFLAGS=" -Wl,-rpath -Wl,${ATLAS_LPATH} -shared"
>
> python setup.py build
>
>
>
> Apparently, the PRIdPTR from inttypes.h isn’t getting expanded.  I dug a
> little deeper and found that I could force it to expand them by defining the
> __STDC_FORMAT_MACROS macro.  The workaround I used was to set my CFLAGS as
> follows:
>
>
>
>             export CFLAGS=” -D__STDC_FORMAT_MACROS”
>
>
>
> Even though this workaround resolved the issue, I am wondering if there is
> something else that I should have done.  If not, then the build process
> should be defining this macro automatically to avoid this error.  Thanks.
>
>
>
This was fixed in r6645. That was just after 0.8.0, which did not support
Python 2.7 (but it should work with this fix).

Cheers,
Ralf


>             Kris
>
>
>
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