[SciPy-User] how use the tutorial "Extending ndimage in C"

moscardi eric.moscardi@sophia.inria...
Fri Oct 22 11:39:18 CDT 2010


Of course,

The simple shift function, referenced on the scipy.ndimage page (http://docs.scipy.org/doc/scipy/reference/tutorial/ndimage.html#ndimage-ccallbacks), doesn't compile.

static int
_shift_function(int *output_coordinates, double* input_coordinates,
                int output_rank, int input_rank, void *callback_data)
{
  int ii;
  /* get the shift from the callback data pointer: */
  double shift = *(double*)callback_data;
  /* calculate the coordinates: */
  for(ii = 0; ii < irank; ii++)
    icoor[ii] = ocoor[ii] - shift;
  /* return OK status: */
  return 1;
}
because the arguments are not correctly named (irank ->  input_rank, icoor ->input_coordinates, ocoor ->  output_coordinates).

I rename them, I compile and I try to run the python code used as example : 

>>> import example
>>> array = arange(12, shape=(4,3), type = Float64)
>>> fnc = example.shift_function(0.5)
>>> print geometric_transform(array, fnc)
I add :
>>> from numpy import array 
but the following syntax is not correct : 
array = arange(12, shape=(4,3), type = Float64)
So I run : 

>>> from numpy import array 
>>> import example
>>> from scipy.ndimage import geometric_transform
>>> array = np.arange(12, dtype = np.float64).reshape(4,3)
>>> fnc = example.shift_function(0.5)
>>> print geometric_transform(array, fnc)

And  the result is not :

[[ 0.      0.      0.    ]
 [ 0.      1.3625  2.7375]
 [ 0.      4.8125  6.1875]
 [ 0.      8.2625  9.6375]]
but I have as result : 

[[ 0.  0.  0.]
 [ 0.  0.  0.]
 [ 0.  0.  0.]
 [ 0.  0.  0.]]

Any ideas ?
Thanks,
Eric

On Oct 22, 2010, at 6:19 PM, Robert Kern wrote:

> On Fri, Oct 22, 2010 at 11:15, moscardi <eric.moscardi@sophia.inria.fr> wrote:
>> Hello,
>> i try to use the tutorial named "Extending ndimage in C" but It doesn't
>> work.
> 
> Please never just say "It doesn't work." Show us exactly what you
> tried. Show us exactly what results you got (copy-and-paste any error
> messages; never paraphrase). Tell us what results you expected.
> 
> -- 
> Robert Kern
> 
> "I have come to believe that the whole world is an enigma, a harmless
> enigma that is made terrible by our own mad attempt to interpret it as
> though it had an underlying truth."
>   -- Umberto Eco
> _______________________________________________
> SciPy-User mailing list
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Eric MOSCARDI
INRIA - Virtual Plants
CIRAD, Avenue Agropolis
34398 Montpellier Cedex 5, France
04 67 61 58 00 (ask number 60 09)
email : eric.moscardi@sophia.inria.fr


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