[SciPy-User] segmentation fault when linear interpolating

Wolfgang Kerzendorf wkerzend@mso.anu.edu...
Fri Mar 18 00:00:18 CDT 2011


Dear all,

I really like quickhull and use it to interpolate on grids that are 
extremely big (2-5 gig). Normally it works really well, but I 
encountered now a problem with it when interpolating in one of my grids. 
It gave me a segmentation fault and this traceback:

Process:         Python [2780]
Path:            
/System/Library/Frameworks/Python.framework/Versions/2.6/Resources/Python.app/Contents/MacOS/Python
Identifier:      org.python.python.app
Version:         2.6 (2.6)
Build Info:      python-440200~2
Code Type:       X86-64 (Native)
Parent Process:  bash [2319]

PlugIn Path:       
/Library/Python/2.6/site-packages/scipy/interpolate/interpnd.so
PlugIn Identifier: interpnd.so
PlugIn Version:    ??? (???)

Date/Time:       2011-03-18 15:56:04.405 +1100
OS Version:      Mac OS X 10.6.6 (10J567)
Report Version:  6

Interval Since Last Report:          4246070 sec
Crashes Since Last Report:           75
Per-App Interval Since Last Report:  4572421 sec
Per-App Crashes Since Last Report:   4
Anonymous UUID:                      9BB099CA-10F8-4163-99F6-8109A901DB1A

Exception Type:  EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000000023bf42000
Crashed Thread:  0  Dispatch queue: com.apple.main-thread

Thread 0 Crashed:  Dispatch queue: com.apple.main-thread
0   interpnd.so                       0x0000000104bd3ebf 
__pyx_pf_8interpnd_20LinearNDInterpolator__evaluate_double + 8874 
(interpnd.c:2935)
1   org.python.python                 0x000000010000aff3 PyObject_Call + 112
2   org.python.python                 0x000000010001a9df PyClass_New + 1575
3   org.python.python                 0x000000010000aff3 PyObject_Call + 112
4   interpnd.so                       0x0000000104bd004b 
__pyx_pf_8interpnd_18NDInterpolatorBase___call__ + 3448 (interpnd.c:2033)
5   org.python.python                 0x000000010000aff3 PyObject_Call + 112
6   org.python.python                 0x000000010001a9df PyClass_New + 1575
7   org.python.python                 0x000000010000aff3 PyObject_Call + 112
8   org.python.python                 0x0000000100051f0e _PyType_Lookup 
+ 6095
9   org.python.python                 0x000000010000aff3 PyObject_Call + 112
10  org.python.python                 0x000000010008a51a 
PyEval_EvalFrameEx + 20328
11  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
12  org.python.python                 0x000000010002c8e1 
PyClassMethod_New + 1748
13  org.python.python                 0x000000010000aff3 PyObject_Call + 112
14  org.python.python                 0x00000001000849db 
PyEval_CallObjectWithKeywords + 175
15  minuit.so                         0x000000010519cb75 
MyFCN::operator()(std::vector<double, std::allocator<double> > const&) 
const + 205 (minuit.cpp:1426)
16  minuit.so                         0x000000010519d2d2 
minuit_Minuit_scan(minuit_Minuit*, _object*, _object*) + 1264 
(minuit.cpp:1229)
17  minuit.so                         0x000000010519d43c 
minuit_Minuit_scan(minuit_Minuit*, _object*, _object*) + 1626 
(minuit.cpp:1272)
18  minuit.so                         0x000000010519d43c 
minuit_Minuit_scan(minuit_Minuit*, _object*, _object*) + 1626 
(minuit.cpp:1272)
19  minuit.so                         0x000000010519d43c 
minuit_Minuit_scan(minuit_Minuit*, _object*, _object*) + 1626 
(minuit.cpp:1272)
20  org.python.python                 0x0000000100089187 
PyEval_EvalFrameEx + 15317
21  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
22  org.python.python                 0x000000010008935e 
PyEval_EvalFrameEx + 15788
23  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
24  org.python.python                 0x000000010008735d 
PyEval_EvalFrameEx + 7595
25  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
26  org.python.python                 0x000000010008935e 
PyEval_EvalFrameEx + 15788
27  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
28  org.python.python                 0x000000010008935e 
PyEval_EvalFrameEx + 15788
29  org.python.python                 0x00000001000892e1 
PyEval_EvalFrameEx + 15663
30  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
31  org.python.python                 0x000000010008935e 
PyEval_EvalFrameEx + 15788
32  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
33  org.python.python                 0x000000010008935e 
PyEval_EvalFrameEx + 15788
34  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
35  org.python.python                 0x000000010008935e 
PyEval_EvalFrameEx + 15788
36  org.python.python                 0x000000010008acce 
PyEval_EvalCodeEx + 1803
37  org.python.python                 0x000000010008ad61 PyEval_EvalCode 
+ 54
38  org.python.python                 0x00000001000a265a 
Py_CompileString + 78
39  org.python.python                 0x00000001000a2723 
PyRun_FileExFlags + 150
40  org.python.python                 0x00000001000a423d 
PyRun_SimpleFileExFlags + 704
41  org.python.python                 0x00000001000b0286 Py_Main + 2718
42  org.python.python.app             0x0000000100000e6c start + 52

Thread 1:  com.apple.CFSocket.private
0   libSystem.B.dylib                 0x00007fff873d3e92 
select$DARWIN_EXTSN + 10
1   com.apple.CoreFoundation          0x00007fff87675498 
__CFSocketManager + 824
2   libSystem.B.dylib                 0x00007fff873c9536 _pthread_start 
+ 331
3   libSystem.B.dylib                 0x00007fff873c93e9 thread_start + 13

Thread 2:  Dispatch queue: com.apple.libdispatch-manager
0   libSystem.B.dylib                 0x00007fff873a916a kevent + 10
1   libSystem.B.dylib                 0x00007fff873ab03d 
_dispatch_mgr_invoke + 154
2   libSystem.B.dylib                 0x00007fff873aad14 
_dispatch_queue_invoke + 185
3   libSystem.B.dylib                 0x00007fff873aa83e 
_dispatch_worker_thread2 + 252
4   libSystem.B.dylib                 0x00007fff873aa168 
_pthread_wqthread + 353
5   libSystem.B.dylib                 0x00007fff873aa005 start_wqthread + 13

Thread 0 crashed with X86 Thread State (64-bit):
   rax: 0x0000000149adde00  rbx: 0x0000000000000000  rcx: 
0x0000000000000000  rdx: 0x00000002037a1e00
   rdi: 0x00000000000001c0  rsi: 0x00000000387a0200  rbp: 
0x00007fff5fbfc750  rsp: 0x00007fff5fbfc270
    r8: 0x00000000000001c0   r9: 0x0000000000000004  r10: 
0x0000000000040c45  r11: 0x0000000000000004
   r12: 0x0000000000000009  r13: 0x0000000000001f40  r14: 
0x0000000000084a08  r15: 0x0000000000001f40
   rip: 0x0000000104bd3ebf  rfl: 0x0000000000010206  cr2: 0x000000023bf42000

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1.1.2 (1.1.2) <E9269069-93FA-2B71-F9BA-FDDD23C4A65E> 
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com.apple.print.framework.Print 6.1 (237.1) 
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(???) <D107CB8A-5182-3AC4-35D0-07068A695C05> 
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/System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
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(507.15) <5170FCE0-ED6C-2E3E-AB28-1DDE3F628FC5> 
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
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/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
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/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
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(1.6.12) <DE3F0528-7759-CDFD-A2CF-C51D3C9C8B39> 
/System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
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(???) <B9ECE1BD-A716-9F65-6466-4444D641F584> 
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libTrueTypeScaler.dylib
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(compatibility 1.0.0) <FB5EE53A-0534-0FFA-B2ED-486609433717> 
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<76438F90-DD4B-9941-9367-F2DFDF927876> 
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(compatibility 1.0.0) <6993F348-428F-C97E-7A84-7BD2EDC46A62> 
/usr/lib/libresolv.9.dylib
     0x7fff87e08000 -     0x7fff87ea8fff  com.apple.LaunchServices 362.2 
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/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
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<6690F15D-E970-2678-430E-590A94F5C8E9> 
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     0x7fff87ed0000 -     0x7fff87ee6fef  libbsm.0.dylib ??? (???) 
<42D3023A-A1F7-4121-6417-FCC6B51B3E90> /usr/lib/libbsm.0.dylib
     0x7fff881a7000 -     0x7fff881eaff7  libRIP.A.dylib 545.0.0 
(compatibility 64.0.0) <7E30B5F6-99FD-C716-8670-5DD4B4BAED72> 
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(???) <609598E6-195D-E5D4-3B92-AE8D9768829C> 
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
     0x7fff881ef000 -     0x7fff88237ff7  libvDSP.dylib 268.0.1 
(compatibility 1.0.0) <98FC4457-F405-0262-00F7-56119CA107B6> 
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
     0x7fff88238000 -     0x7fff883effef  com.apple.ImageIO.framework 
3.0.4 (3.0.4) <2CB9997A-A28D-80BC-5921-E7D50BBCACA7> 
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
     0x7fff883f0000 -     0x7fff883f0ff7  com.apple.Carbon 150 (152) 
<19B37B7B-1594-AD0A-7F14-FA2F85AD7241> 
/System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
     0x7fff883f1000 -     0x7fff88403fe7  libsasl2.2.dylib 3.15.0 
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/usr/lib/libsasl2.2.dylib
     0x7fff889ca000 -     0x7fff889d6fff  libbz2.1.0.dylib 1.0.5 
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/usr/lib/libbz2.1.0.dylib
     0x7fff88c42000 -     0x7fff88c97ff7  
com.apple.framework.familycontrols 2.0.2 (2020) 
<A3CFF697-B9DB-A7E5-3B39-9DA9B34F0595> 
/System/Library/PrivateFrameworks/FamilyControls.framework/Versions/A/FamilyControls
     0x7fff88e17000 -     0x7fff8914bfff  
com.apple.CoreServices.CarbonCore 861.23 (861.23) 
<08F360FA-1771-4F0B-F356-BEF68BB9D421> 
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
     0x7fff891c6000 -     0x7fff891dafff  libGL.dylib ??? (???) 
<1EB1BD0F-C17F-55DF-B8B4-8E9CF99359D4> 
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
     0x7fff891db000 -     0x7fff891efff7  
com.apple.speech.synthesis.framework 3.10.35 (3.10.35) 
<621B7415-A0B9-07A7-F313-36BEEDD7B132> 
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
     0x7fffffe00000 -     0x7fffffe01fff  libSystem.B.dylib ??? (???) 
<71E6D4C9-F945-6EC2-998C-D61AD590DAB6> /usr/lib/libSystem.B.dylib

Model: MacBookPro6,2, BootROM MBP61.0057.B0C, 2 processors, Intel Core 
i7, 2.66 GHz, 8 GB, SMC 1.58f16
Graphics: NVIDIA GeForce GT 330M, NVIDIA GeForce GT 330M, PCIe, 512 MB
Graphics: Intel HD Graphics, Intel HD Graphics, Built-In, 288 MB
Memory Module: global_name
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x93), 
Broadcom BCM43xx 1.0 (5.10.131.36.1)
Bluetooth: Version 2.3.8f7, 2 service, 12 devices, 1 incoming serial ports
Network Service: AirPort, AirPort, en1
Serial ATA Device: ST95005620AS, 465.76 GB
Serial ATA Device: HL-DT-ST DVDRW  GS23N
USB Device: Hub, 0x0424  (SMSC), 0x2514, 0xfd100000
USB Device: Built-in iSight, 0x05ac  (Apple Inc.), 0x8507, 0xfd110000
USB Device: IR Receiver, 0x05ac  (Apple Inc.), 0x8242, 0xfd120000
USB Device: Hub, 0x0424  (SMSC), 0x2514, 0xfa100000
USB Device: Internal Memory Card Reader, 0x05ac  (Apple Inc.), 0x8403, 
0xfa130000
USB Device: Apple Internal Keyboard / Trackpad, 0x05ac  (Apple Inc.), 
0x0236, 0xfa120000
USB Device: BRCM2070 Hub, 0x0a5c  (Broadcom Corp.), 0x4500, 0xfa110000
USB Device: Bluetooth USB Host Controller, 0x05ac  (Apple Inc.), 0x8218, 
0xfa113000



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