[SciPy-User] PB with scipy installation

Ghislain Viguier ghislain.viguier@cea...
Tue Sep 6 03:39:20 CDT 2011


Hello,

I try to install scipy with the intel mkl library but I get some errors :

    $ ls
    doc  INSTALL.txt  LATEST.txt  LICENSE.txt  MANIFEST.in  PKG-INFO 
    README.txt  scipy  setupegg.py  setup.py  setupscons.py  THANKS.txt 
    TOCHANGE.txt  tools
    $   python setup.py install
    Warning: No configuration returned, assuming unavailable.blas_opt_info:
    blas_mkl_info:
    /usr/local/python-2.6.2/lib/python2.6/site-packages/numpy/distutils/system_info.py:527:
    UserWarning: Specified path
    /usr/local/Intel_compilers/c/composerxe-2011.3.174/mkl/lib/em64t is
    invalid.
       warnings.warn('Specified path %s is invalid.' % d)
       NOT AVAILABLE
    [...]

I added a symbolic link em64t to intel64 :

    $ ls /usr/local/Intel_compilers/c/composerxe-2011.3.174/mkl/lib
    ia32  intel64
    $ cd /usr/local/Intel_compilers/c/composerxe-2011.3.174/mkl/lib
    $ ln -s intel64 em64t
    $ ls /usr/local/Intel_compilers/c/composerxe-2011.3.174/mkl/lib/
    em64t  ia32  intel64
    $ ll /usr/local/Intel_compilers/c/composerxe-2011.3.174/mkl/lib/em64t
    lrwxrwxrwx 1 viguierg install2 7 Sep  6 10:16
    /usr/local/Intel_compilers/c/composerxe-2011.3.174/mkl/lib/em64t ->
    intel64

Then I started again the install script :

    $   python setup.py install
    Warning: No configuration returned, assuming unavailable.blas_opt_info:
    blas_mkl_info:
       libraries mkl,vml,guide not found in
    /usr/local/Intel_compilers/c/composerxe-2011.3.174/mkl/lib/em64t
       NOT AVAILABLE
    [...]

But I still get errors.
What am I doing wrong? Do I miss something?.
Thanks for your support.

Best regards,
Ghislain Viguier

PS : there is some futher information about my system :

    $ python -c 'from numpy.f2py.diagnose import run; run()'
    ------
    os.name='posix'
    ------
    sys.platform='linux2'
    ------
    sys.version:
    2.6.2 (r262:71600, Jul 22 2011, 11:30:26)
    [GCC 4.4.4 20100726 (Bull 4.4.4-13)]
    ------
    sys.prefix:
    /usr/local/python-2.6.2
    ------
    sys.path=':/usr/local/python-2.6.2/lib/python2.6:/usr/local/python-2.6.2/lib/python26.zip:/usr/local/python-2.6.2/lib/python2.6/plat-linux2:/usr/local/python-2.6.2/lib/python2.6/lib-tk:/usr/local/python-2.6.2/lib/python2.6/lib-old:/usr/local/python-2.6.2/lib/python2.6/lib-dynload:/usr/local/python-2.6.2/lib/python2.6/site-packages'
    ------
    Found new numpy version '1.5.1' in
    /usr/local/python-2.6.2/lib/python2.6/site-packages/numpy/__init__.pyc
    Found f2py2e version '1' in
    /usr/local/python-2.6.2/lib/python2.6/site-packages/numpy/f2py/f2py2e.pyc
    Found numpy.distutils version '0.4.0' in
    '/usr/local/python-2.6.2/lib/python2.6/site-packages/numpy/distutils/__init__.pyc'
    ------
    Importing numpy.distutils.fcompiler ... ok
    ------
    Checking availability of supported Fortran compilers:
    GnuFCompiler instance properties:
       archiver        = ['/usr/bin/g77', '-cr']
       compile_switch  = '-c'
       compiler_f77    = ['/usr/bin/g77', '-g', '-Wall', '-fno-second-
                         underscore', '-fPIC', '-O3', '-funroll-loops']
       compiler_f90    = None
       compiler_fix    = None
       libraries       = ['g2c']
       library_dirs    = []
       linker_exe      = ['/usr/bin/g77', '-g', '-Wall', '-g', '-Wall']
       linker_so       = ['/usr/bin/g77', '-g', '-Wall', '-g', '-Wall', '-
                         shared']
       object_switch   = '-o '
       ranlib          = ['/usr/bin/g77']
       version         = LooseVersion ('3.4.6')
       version_cmd     = ['/usr/bin/g77', '--version']
    IntelEM64TFCompiler instance properties:
       archiver        =
                        
    ['/ccc/products2/Intel_compilers/BullEL_6__x86_64/fortran/
                         composerxe-2011.3.174/bin/intel64/ifort', '-cr']
       compile_switch  = '-c'
       compiler_f77    =
                        
    ['/ccc/products2/Intel_compilers/BullEL_6__x86_64/fortran/
                         composerxe-2011.3.174/bin/intel64/ifort',
    '-FI', '-w90', '
                         -w95', '-fPIC', '-cm', '-O3', '-unroll',
    '-tpp7', '-xW']
       compiler_f90    =
                        
    ['/ccc/products2/Intel_compilers/BullEL_6__x86_64/fortran/
                         composerxe-2011.3.174/bin/intel64/ifort',
    '-FR', '-fPIC',
                         '-cm', '-O3', '-unroll', '-tpp7', '-xW']
       compiler_fix    =
                        
    ['/ccc/products2/Intel_compilers/BullEL_6__x86_64/fortran/
                         composerxe-2011.3.174/bin/intel64/ifort',
    '-FI', '-fPIC',
                         '-cm', '-O3', '-unroll', '-tpp7', '-xW']
       libraries       = []
       library_dirs    = []
       linker_exe      = None
       linker_so       =
                        
    ['/ccc/products2/Intel_compilers/BullEL_6__x86_64/fortran/
                         composerxe-2011.3.174/bin/intel64/ifort',
    '-shared', '-
                         shared', '-nofor_main']
       object_switch   = '-o '
       ranlib          =
                        
    ['/ccc/products2/Intel_compilers/BullEL_6__x86_64/fortran/
                         composerxe-2011.3.174/bin/intel64/ifort']
       version         = LooseVersion ('12.0.3.174')
       version_cmd     =
                        
    ['/ccc/products2/Intel_compilers/BullEL_6__x86_64/fortran/
                         composerxe-2011.3.174/bin/intel64/ifort',
    '-FI', '-V', '-
                         c', '/tmp/tmpAM7Glj/aUFseR.f', '-o',
                         '/tmp/tmpAM7Glj/aUFseR.o']
    Gnu95FCompiler instance properties:
       archiver        = ['/usr/bin/gfortran', '-cr']
       compile_switch  = '-c'
       compiler_f77    = ['/usr/bin/gfortran', '-Wall', '-ffixed-form',
    '-fno-
                         second-underscore', '-fPIC', '-O3',
    '-funroll-loops']
       compiler_f90    = ['/usr/bin/gfortran', '-Wall',
    '-fno-second-underscore',
                         '-fPIC', '-O3', '-funroll-loops']
       compiler_fix    = ['/usr/bin/gfortran', '-Wall', '-ffixed-form',
    '-fno-
                         second-underscore', '-Wall',
    '-fno-second-underscore', '-
                         fPIC', '-O3', '-funroll-loops']
       libraries       = ['gfortran']
       library_dirs    = []
       linker_exe      = ['/usr/bin/gfortran', '-Wall', '-Wall']
       linker_so       = ['/usr/bin/gfortran', '-Wall', '-Wall', '-shared']
       object_switch   = '-o '
       ranlib          = ['/usr/bin/gfortran']
       version         = LooseVersion ('4.4.4')
       version_cmd     = ['/usr/bin/gfortran', '--version']
    Fortran compilers found:
       --fcompiler=gnu      GNU Fortran 77 compiler (3.4.6)
       --fcompiler=gnu95    GNU Fortran 95 compiler (4.4.4)
       --fcompiler=intelem  Intel Fortran Compiler for EM64T-based apps
                            (12.0.3.174)
    Compilers available for this platform, but not found:
       --fcompiler=absoft  Absoft Corp Fortran Compiler
       --fcompiler=compaq  Compaq Fortran Compiler
       --fcompiler=g95     G95 Fortran Compiler
       --fcompiler=intel   Intel Fortran Compiler for 32-bit apps
       --fcompiler=intele  Intel Fortran Compiler for Itanium apps
       --fcompiler=lahey   Lahey/Fujitsu Fortran 95 Compiler
       --fcompiler=nag     NAGWare Fortran 95 Compiler
       --fcompiler=pg      Portland Group Fortran Compiler
       --fcompiler=vast    Pacific-Sierra Research Fortran 90 Compiler
    Compilers not available on this platform:
       --fcompiler=hpux      HP Fortran 90 Compiler
       --fcompiler=ibm       IBM XL Fortran Compiler
       --fcompiler=intelev   Intel Visual Fortran Compiler for Itanium apps
       --fcompiler=intelv    Intel Visual Fortran Compiler for 32-bit apps
       --fcompiler=intelvem  Intel Visual Fortran Compiler for 64-bit apps
       --fcompiler=mips      MIPSpro Fortran Compiler
       --fcompiler=none      Fake Fortran compiler
       --fcompiler=sun       Sun or Forte Fortran 95 Compiler
    For compiler details, run 'config_fc --verbose' setup command.
    ------
    Importing numpy.distutils.cpuinfo ... ok
    ------
    CPU information: CPUInfoBase__get_nbits getNCPUs has_mmx has_sse
    has_sse2 has_sse3 has_ssse3 is_64bit is_Intel is_XEON is_Xeon
    is_i686 ------


-- 
Ghislain Viguier
Support Applicatif CCRT-TGCC
tél. : 01 77 57 40 53

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