[SciPy-User] fast spline interpolation of multiple equal length waveforms

Jonathan Stickel jjstickel@vcn....
Fri Sep 23 08:54:48 CDT 2011


On 9/22/11 20:36 , scipy-user-request@scipy.org wrote:
> Date: Thu, 22 Sep 2011 21:59:59 -0400
> From: Hjalmar Turesson<hturesson@gmail.com>
> Subject: [SciPy-User] fast spline interpolation of multiple equal
> 	length	waveforms
> To:scipy-user@scipy.org
> Message-ID:
> 	<CAA7EFhTV8Zm9NPwyppatAy4W9G1PDF3gUmgE79sROC8LjOzW8g@mail.gmail.com>
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>
> Hi,
> I got a data set with hundreds of thousands for 40 point long waveforms. I
> want to use cubic splines to interpolate these at intermediate time points.
> However, the points are different all waveforms, only the number of points
> is the same. In other words, I want to interpolate a large number of equally
> short waveforms, each to its own grid of x-values/time points, and I want to
> do this as FAST as possible.
>
> Are there any functions that can take a whole array for waveforms and a size
> matched array of new x-values, and interpolate each waveform at a matched
> row (or column) of x-values?
>
> What I've found, this far, appear to require a loop to one by one go through
> the waveforms and corresponding grid of x-values. I fear that a long loop
> will be significantly slower than a direct evaluation of the entire array.
>
> Thanks,
> Hjalmar

For each data set (x,y), are the x-values the same and the y-values 
different?  If so, you may find this code useful:

http://scipy-central.org/item/21/1/simple-piecewise-polynomial-interpolation

It is not splines, but nonetheless provides good quality interpolation 
and is very fast.  For given x and x_interp, it can create an 
interpolation matrix P.  Then y_interp = P*y.  If you have all your 
y-data in Y, then Y_interp = P*Y.

HTH,
Jonathan


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