[SciPy-User] Fwd: scipy.test() fails for 0.11.0 on OS X 10.8.2

Adam Schneider amschne@umich....
Sun Dec 30 18:16:30 CST 2012


Hello,

I'm trying to install scipy on my macbook and am getting the following
failure(s) when running scipy.test():

On OS X 10.8.2 (Core i7), scipy.test() for scipy version 0.11.0 fails the
following test:

```
In [2]: import scipy

In [3]: scipy.test()
Running unit tests for scipy
NumPy version 1.8.0.dev-a8c641f
NumPy is installed in /usr/local/lib/python2.7/site-packages/numpy
SciPy version 0.11.0
SciPy is installed in /usr/local/lib/python2.7/site-packages/scipy
Python version 2.7.3 (default, Dec  3 2012, 00:18:53) [GCC 4.2.1 Compatible
Apple Clang 4.1 ((tags/Apple/clang-421.11.66))]
nose version 1.2.1
```
...(see https://gist.github.com/4416094 for full failure log)

```
Ran 5481 tests in 58.156s

FAILED (KNOWNFAIL=13, SKIP=42, errors=48, failures=72)
Out[3]: <nose.result.TextTestResult run=5481 errors=48 failures=72>
```
Here's my compiler info:
```
    build_src
    building py_modules sources
    building library "npymath" sources
    customize Gnu95FCompiler
    Found executable /usr/local/bin/gfortran
    customize Gnu95FCompiler
    customize Gnu95FCompiler using config
    C compiler: cc -fno-strict-aliasing -fno-common -dynamic
-I/usr/local/include -DNDEBUG -g -O3 -Wall -Wstrict-prototypes

    compile options:
'-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/private
-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src
-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core
-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/npymath
-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/multiarray
-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/umath
-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/npysort
-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/include
-I/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c'
```
```
$ cc --version
Apple clang version 4.1 (tags/Apple/clang-421.11.66) (based on LLVM 3.1svn)
Target: x86_64-apple-darwin12.2.1
Thread model: posix

$ gfortran --version
GNU Fortran (GCC) 4.7.2

$ python --version
Python 2.7.3
```

This version of scipy was installed using pip.  What can I do to eliminate
these failures and get scipy working properly?

Thank you for the help,

Adam




On Sun, Dec 30, 2012 at 7:01 PM, <scipy-dev-owner@scipy.org> wrote:

> This is a members-only list.  Your message has been automatically
> rejected, since it came from a non-member's email address.  Please
> make sure to use the email account that you used to join this list.
>
>
>
> ---------- Forwarded message ----------
> From: Adam Schneider <amschne@umich.edu>
> To: scipy-dev@scipy.org
> Cc: Jordan Schneider <jbschne@umich.edu>
> Date: Sun, 30 Dec 2012 19:06:34 -0500
> Subject: scipy.test() fails for 0.11.0 on OS X 10.8.2
> Hello,
>
> I'm trying to install scipy on my macbook and am getting the following
> failure(s) when running scipy.test():
>
> On OS X 10.8.2 (Core i7), scipy.test() for scipy version 0.11.0 fails the
> following test:
>
> ```
> In [2]: import scipy
>
> In [3]: scipy.test()
> Running unit tests for scipy
> NumPy version 1.8.0.dev-a8c641f
> NumPy is installed in /usr/local/lib/python2.7/site-packages/numpy
> SciPy version 0.11.0
> SciPy is installed in /usr/local/lib/python2.7/site-packages/scipy
> Python version 2.7.3 (default, Dec  3 2012, 00:18:53) [GCC 4.2.1
> Compatible Apple Clang 4.1 ((tags/Apple/clang-421.11.66))]
> nose version 1.2.1
> ```
> ...(see https://gist.github.com/4416094 for full failure log)
>
> ```
> Ran 5481 tests in 58.156s
>
> FAILED (KNOWNFAIL=13, SKIP=42, errors=48, failures=72)
> Out[3]: <nose.result.TextTestResult run=5481 errors=48 failures=72>
> ```
> Here's my compiler info:
> ```
>     build_src
>     building py_modules sources
>     building library "npymath" sources
>     customize Gnu95FCompiler
>     Found executable /usr/local/bin/gfortran
>     customize Gnu95FCompiler
>     customize Gnu95FCompiler using config
>     C compiler: cc -fno-strict-aliasing -fno-common -dynamic
> -I/usr/local/include -DNDEBUG -g -O3 -Wall -Wstrict-prototypes
>
>     compile options:
> '-I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/private
> -I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src
> -I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core
> -I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/npymath
> -I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/multiarray
> -I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/umath
> -I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/src/npysort
> -I/private/var/folders/sz/fc0nh0x16fv3ytl31cff6tq80000gn/T/pip-build/numpy-dev/numpy/core/include
> -I/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/include/python2.7
> -c'
> ```
> ```
> $ cc --version
> Apple clang version 4.1 (tags/Apple/clang-421.11.66) (based on LLVM 3.1svn)
> Target: x86_64-apple-darwin12.2.1
> Thread model: posix
>
> $ gfortran --version
> GNU Fortran (GCC) 4.7.2
>
> $ python --version
> Python 2.7.3
> ```
>
> This version of scipy was installed using pip.  What can I do to eliminate
> these failures and get scipy working properly?
>
> Thank you for the help,
>
> Adam
>
>
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