[SciPy-User] ANN: SciPy 0.10.1 release candidate 1

Scott Lasley slasley@space.umd....
Sun Feb 12 15:02:57 CST 2012


I downloaded scipy-0.10.1rc1.tar.gz from sourceforge and installed it on a MacPro running OS X 10.7.3, XCode 4.2.1, gfortran from the R Project, numpy 1.6.1 from sourceforge, and python 2.7.2 from python.org with these commands

export MACOSX_DEPLOYMENT_TARGET=10.7
export CC=/usr/bin/gcc
python setupegg.py build --fcompiler=gfortran
python setupegg.py bdist_egg
unset MACOSX_DEPLOYMENT_TARGET
unset CC
easy_install -U dist/scipy-0.10.1rc1-py2.7-macosx-10.6-intel.egg

scipy crashes python and python-32 in TestDoubleIFFT.  I get similar crashes with scipy 2.0.0.dev-8d1b91e and numpy 0.11.0.dev-912768f from github.

$ python
Python 2.7.2 (v2.7.2:8527427914a2, Jun 11 2011, 15:22:34) 
[GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import scipy
>>> scipy.test(verbose=10)
Running unit tests for scipy
NumPy version 1.6.1
NumPy is installed in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy
SciPy version 0.10.1rc1
SciPy is installed in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy-0.10.1rc1-py2.7-macosx-10.6-intel.egg/scipy
Python version 2.7.2 (v2.7.2:8527427914a2, Jun 11 2011, 15:22:34) [GCC 4.2.1 (Apple Inc. build 5666) (dot 3)]
nose version 1.1.2
nose.config: INFO: Ignoring files matching ['^\\.', '^_', '^setup\\.py$']
nose.config: INFO: Excluding tests matching ['f2py_ext', 'f2py_f90_ext', 'gen_ext', 'pyrex_ext', 'swig_ext']
Tests cophenet(Z) on tdist data set. ... ok
...
Check that updating stored values with exact ones worked. ... ok
test_constants.test_fahrenheit_to_celcius ... ok
test_constants.test_celcius_to_kelvin ... ok
test_constants.test_kelvin_to_celcius ... ok
test_constants.test_fahrenheit_to_kelvin ... ok
test_constants.test_kelvin_to_fahrenheit ... ok
test_constants.test_celcius_to_fahrenheit ... ok
test_constants.test_lambda_to_nu ... ok
test_constants.test_nu_to_lambda ... ok
test_definition (test_basic.TestDoubleFFT) ... ok
test_djbfft (test_basic.TestDoubleFFT) ... ok
test_n_argument_real (test_basic.TestDoubleFFT) ... ok
test_definition (test_basic.TestDoubleIFFT) ... FAIL
test_definition_real (test_basic.TestDoubleIFFT) ... ok
test_djbfft (test_basic.TestDoubleIFFT) ... FAIL
test_random_complex (test_basic.TestDoubleIFFT) ... FAIL
Python(68720) malloc: *** error for object 0x105312530: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
Abort trap: 6
$

$ python-32
Python 2.7.2 (v2.7.2:8527427914a2, Jun 11 2011, 15:22:34) 
[GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import scipy
>>> scipy.test(verbose=10)
Running unit tests for scipy
NumPy version 1.6.1
NumPy is installed in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy
SciPy version 0.10.1rc1
SciPy is installed in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy-0.10.1rc1-py2.7-macosx-10.6-intel.egg/scipy
Python version 2.7.2 (v2.7.2:8527427914a2, Jun 11 2011, 15:22:34) [GCC 4.2.1 (Apple Inc. build 5666) (dot 3)]
nose version 1.1.2
nose.config: INFO: Ignoring files matching ['^\\.', '^_', '^setup\\.py$']
nose.config: INFO: Excluding tests matching ['f2py_ext', 'f2py_f90_ext', 'gen_ext', 'pyrex_ext', 'swig_ext']
...
test_definition (test_basic.TestDoubleFFT) ... ok
test_djbfft (test_basic.TestDoubleFFT) ... ok
test_n_argument_real (test_basic.TestDoubleFFT) ... ok
test_definition (test_basic.TestDoubleIFFT) ... Python(68743) malloc: *** error for object 0x3a33604: incorrect checksum for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
FAIL
test_definition_real (test_basic.TestDoubleIFFT) ... ok
test_djbfft (test_basic.TestDoubleIFFT) ... Python(68743) malloc: *** error for object 0x3a2e2c4: incorrect checksum for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
FAIL
test_random_complex (test_basic.TestDoubleIFFT) ... FAIL
test_random_real (test_basic.TestDoubleIFFT) ... Python(68743) malloc: *** error for object 0x354c604: incorrect checksum for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
FAIL
test_size_accuracy (test_basic.TestDoubleIFFT) ... Bus error: 10
$


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