[SciPy-User] ANN: SciPy 0.11.0 release

Robert Pyle rpyle@post.harvard....
Thu Sep 27 15:43:51 CDT 2012


Hi Ralf,

I installed scipy from source on Anaconda, reasoning that the dmg was only for the python.org installation.  I have Apple's latest Xcode, and the installation went through without any (apparent) errors.

I misspoke when I said I installed 0.11.0rc2; that came with Anaconda CE from Continuum.

I have also installed 0.11.0 on python.org 2.7.3 from scipy-0.11.0-py2.7-python.org-macosx10.6.dmg.  This doesn't segfault of course, but I do get 9 errors and 9 unknown failures.  I'm attaching zipped logs for both (verbose=2 for the Anaconda segfault, as you asked).  I trust the file names are self-explanatory.

Bob

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On Sep 27, 2012, at 12:32 PM, Ralf Gommers <ralf.gommers@gmail.com> wrote:

> 
> 
> On Thu, Sep 27, 2012 at 4:01 PM, Robert Pyle <rpyle@post.harvard.edu> wrote:
> Hi,
> 
> I ran into a segfault with AnacondaCE on OSX 10.8.2
> 
> $ python
> Python 2.7.3 AnacondaCE (default, Sep  4 2012, 10:42:42)
> [GCC 4.0.1 (Apple Inc. build 5493)] on darwin
> Type "help", "copyright", "credits" or "license" for more information.
> >>> import scipy as sp
> >>> sp.test()
> Running unit tests for scipy
> NumPy version 1.7.0b2
> NumPy is installed in /opt/anaconda/lib/python2.7/site-packages/numpy
> SciPy version 0.11.0
> SciPy is installed in /opt/anaconda/lib/python2.7/site-packages/scipy
> Python version 2.7.3 AnacondaCE (default, Sep  4 2012, 10:42:42) [GCC 4.0.1 (Apple Inc. build 5493)]
> nose version 1.1.2
> .....................................................................................................................................................................................F.FFFSegmentation fault: 11
> 
> Could you run the tests with "scipy.test(verbose=2) to see where the issue occurs?
> 
> 
> I installed 0.11.0rc2 which seems to run fine for my purposes but where scipy.test() gives
> 
> Did you install both rc2 and final from the dmgs on SourceForge with macosx-10.6 in the name?
>  
> FAILED (KNOWNFAIL=13, SKIP=29, errors=11, failures=73)
> <nose.result.TextTestResult run=5484 errors=11 failures=73>
> 
> I attach a zipped file of the error log, in case that's useful.
> 
> The test errors/failures in that log are all known. The IndexError/ValueError ones are because of an issue in numpy 1.7.0b2, which should be fixed before the final 1.7.0 release. The other ones are due to issues with Apple's Accelerate Framework. So doesn't look related.
> 
> Can anyone comment on how Anaconda CE was built? I can imagine problems could occur if it was built on OS X 10.7 or 10.8 while scipy 0.11.0 was built on OS X 10.6.
> 
> Ralf
> 
>  
> 
> And a heartfelt thanks to all who work on this.  You make my life so much easier!
> 
> Bob Pyle
> Cambridge, MA
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