[Numpy-discussion] Extracting all the possible combinations of a grid
Gael Varoquaux
gael.varoquaux@normalesup....
Fri Sep 21 15:08:10 CDT 2007
On Fri, Sep 21, 2007 at 01:52:31PM -0600, Charles R Harris wrote:
> Go here, http://www.cs.utsa.edu/~wagner/knuth/. I think you want fascicle
> 4A, http://www.cs.utsa.edu/~wagner/knuth/fasc4a.pdf. Some of the fascicles
> from Vol 4 of TAOCP are now in print, http://tinyurl.com/2goxpr.
:->. That's the best answer I have ever had so far: RTFAOCP !
OK, I'll have a look, but I'd be surprised he talks about loop free ways.
Anyhow, I have kludged a solution that seems to be working. Not the most
beautiful ever, but it seems to be working. I will need to time it, but
first I need to ask the end user what the actual numbers are.
Here is the kludge, feel free to lough:
+++++++++++++++++++++++++++++++++++++++++++++++++++++
from numpy import reshape, indices, arange, take, diff
def unique_nplets(size, dims):
""" Generate all the possible unique combinations of n=dims integers
below size.
"""
# Generate all the possible nplets
##triplets = reshape(mgrid[0:2, 0:2, 0:2], (3, -1))
nplets = reshape(indices(dims*[size,]), (dims, -1))
# Sort them
nplets.sort(axis=0)
nplets.sort(axis=-1)
# Compare succesive columns using the diff, than sum the diff (all
# positiv
# numbers), is the sum is not zero, the columns are different, make a
# mask out of this condition, and apply it to arange to retrieve the
# indices of these columns
unique_indices = arange(size**dims)[(diff(nplets).sum(axis=0) > 0)]
# Retrieve the unique columns
unique_nplets = take(nplets, unique_indices, axis=-1)
return unique_nplets
+++++++++++++++++++++++++++++++++++++++++++++++++++++
I was actually excepting numpy (or scipy) to have functions built-in for
these kind of problems. Or to have people on the list having already done
this.
Thanks for the reply, I will indeed look it up.
Gaël
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