[Numpy-discussion] module compiled against ABI version 2000000 but this version of numpy is 1000009

Peter Schmidtke pschmidtke@mmb.pcb.ub...
Thu Jul 29 12:07:24 CDT 2010

On 29/07/2010, at 19:01, Pauli Virtanen wrote:

> Thu, 29 Jul 2010 18:45:38 +0200, Peter Schmidtke wrote:
>> I am trying to install manually the latest releases of scipy and numpy
>> on Mac OSX 10.6 Snow Leopard. I previously used the dmg installer that
>> is available, but the numpy version is too new for some other modules I
>> have and need on my machine,
> Which dmg installer? Numpy 1.4.1 is the newest one available.

I used those things here : http://stronginference.com/scipy-superpack/

>> so I went for a manual install of numpy 1.4 and scipy 0.8.
> How is manually compiling 1.4.1 different from using the 1.4.1 dmg? Or is 
> this some OSX issue where you have multiple versions of Python around?
well the scipy superpack uses numpy2.0 (which is a dev version I suppose) and scipy 0.9.

>> I can import numpy without problems, but when I import scipy.cluster for
>> example, I get an error message like:
>> module compiled against ABI version 2000000 but this version of numpy is
>> 1000009
> You have compiled scipy not against 1.4.1, but some other version of 
> Numpy -- probably the SVN trunk, or possibly 1.4.0 (a release that was 
> cancelled because of binary incompatibility).

well I thought that I got rid of all resting numpy pieces on the system, but I'll double check

> You need to recompile scipy, and check that you use the version of Numpy 
> you expect to use.
>> I understand that both scipy and numpy are not compatible...but what
>> numpy version should I use? I already use the newest release
> The above indeed shows that you are probably using 1.4.1, but the scipy 
> you import was compiled against either the SVN version of Numpy or 1.4.0.
> -- 
> Pauli Virtanen
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Peter Schmidtke

PhD Student
Department of Physical Chemistry
School of Pharmacy
University of Barcelona
Barcelona, Spain

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