[Numpy-discussion] Raveling, reshape order keyword unnecessarily confuses index and memory ordering
josef.pktd@gmai...
josef.pktd@gmai...
Sat Mar 30 06:48:19 CDT 2013
On Sat, Mar 30, 2013 at 7:14 AM, <josef.pktd@gmail.com> wrote:
> On Fri, Mar 29, 2013 at 10:08 PM, Matthew Brett <matthew.brett@gmail.com> wrote:
>>
>> Hi,
>>
>> We were teaching today, and found ourselves getting very confused
>> about ravel and shape in numpy.
>>
>> Summary
>> --------------
>>
>> There are two separate ideas needed to understand ordering in ravel and reshape:
>>
>> Idea 1): ravel / reshape can proceed from the last axis to the first,
>> or the first to the last. This is "ravel index ordering"
>> Idea 2) The physical layout of the array (on disk or in memory) can be
>> "C" or "F" contiguous or neither.
>> This is "memory ordering"
>>
>> The index ordering is usually (but see below) orthogonal to the memory ordering.
>>
>> The 'ravel' and 'reshape' commands use "C" and "F" in the sense of
>> index ordering, and this mixes the two ideas and is confusing.
>>
>> What the current situation looks like
>> ----------------------------------------------------
>>
>> Specifically, we've been rolling this around 4 experienced numpy users
>> and we all predicted at least one of the results below wrongly.
>>
>> This was what we knew, or should have known:
>>
>> In [2]: import numpy as np
>>
>> In [3]: arr = np.arange(10).reshape((2, 5))
>>
>> In [5]: arr.ravel()
>> Out[5]: array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
>>
>> So, the 'ravel' operation unravels over the last axis (1) first,
>> followed by axis 0.
>>
>> So far so good (even if the opposite to MATLAB, Octave).
>>
>> Then we found the 'order' flag to ravel:
>>
>> In [10]: arr.flags
>> Out[10]:
>> C_CONTIGUOUS : True
>> F_CONTIGUOUS : False
>> OWNDATA : False
>> WRITEABLE : True
>> ALIGNED : True
>> UPDATEIFCOPY : False
>>
>> In [11]: arr.ravel('C')
>> Out[11]: array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
>>
>> But we soon got confused. How about this?
>>
>> In [12]: arr_F = np.array(arr, order='F')
>>
>> In [13]: arr_F.flags
>> Out[13]:
>> C_CONTIGUOUS : False
>> F_CONTIGUOUS : True
>> OWNDATA : True
>> WRITEABLE : True
>> ALIGNED : True
>> UPDATEIFCOPY : False
>>
>> In [16]: arr_F
>> Out[16]:
>> array([[0, 1, 2, 3, 4],
>> [5, 6, 7, 8, 9]])
>>
>> In [17]: arr_F.ravel('C')
>> Out[17]: array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
>>
>> Right - so the flag 'C' to ravel, has got nothing to do with *memory*
>> ordering, but is to do with *index* ordering.
>>
>> And in fact, we can ask for memory ordering specifically:
>>
>> In [22]: arr.ravel('K')
>> Out[22]: array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
>>
>> In [23]: arr_F.ravel('K')
>> Out[23]: array([0, 5, 1, 6, 2, 7, 3, 8, 4, 9])
>>
>> In [24]: arr.ravel('A')
>> Out[24]: array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
>>
>> In [25]: arr_F.ravel('A')
>> Out[25]: array([0, 5, 1, 6, 2, 7, 3, 8, 4, 9])
>>
>> There are some confusions to get into with the 'order' flag to reshape
>> as well, of the same type.
>>
>> Ravel and reshape use the tems 'C' and 'F" in the sense of index ordering.
>>
>> This is very confusing. We think the index ordering and memory
>> ordering ideas need to be separated, and specifically, we should avoid
>> using "C" and "F" to refer to index ordering.
>>
>> Proposal
>> -------------
>>
>> * Deprecate the use of "C" and "F" meaning backwards and forwards
>> index ordering for ravel, reshape
>> * Prefer "Z" and "N", being graphical representations of unraveling in
>> 2 dimensions, axis1 first and axis0 first respectively (excellent
>> naming idea by Paul Ivanov)
>>
>> What do y'all think?
>>
>> Cheers,
>>
>> Matthew
>> Paul Ivanov
>> JB Poline
>> _______________________________________________
>> NumPy-Discussion mailing list
>> NumPy-Discussion@scipy.org
>> http://mail.scipy.org/mailman/listinfo/numpy-discussion
>
>
>
> I always thought "F" and "C" are easy to understand, I always thought about
> the content and never about the memory when using it.
>
> In my numpy htmlhelp for version 1.5, I don't have a K or A option
>
>>>> np.__version__
> '1.5.1'
>
>>>> np.arange(5).ravel("K")
> Traceback (most recent call last):
> File "<stdin>", line 1, in <module>
> TypeError: order not understood
>
>>>> np.arange(5).ravel("A")
> array([0, 1, 2, 3, 4])
>>>>
>
> the C, F in ravel have their twins in reshape
>
>>>> arr = np.arange(10).reshape(2,5, order="C").copy()
>>>> arr
> array([[0, 1, 2, 3, 4],
> [5, 6, 7, 8, 9]])
>>>> arr.ravel()
> array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
>>>> arr = np.arange(10).reshape(2,5, order="F").copy()
>>>> arr
> array([[0, 2, 4, 6, 8],
> [1, 3, 5, 7, 9]])
>>>> arrarr.ravel("F")
> array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
>
> For example we use it when we get raveled arrays from R,
> and F for column order and C for row order indexing are pretty
> obvious names when coming from another package (Matlab, R, Gauss)
just a quick search to get an idea
in statsmodels
19 out of 135 ravel are ravel('F')
50 out of 270 reshapes specify: reshape.*order='F' (regular expression)
Josef
>
> Josef
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