[SciPy-dev] scipy and ATLAS (in)dependency

Perry Greenfield perry at stsci.edu
Sat Oct 9 20:40:31 CDT 2004

Pearu Peterson wrote:

> Hi,
> Today I was reading "Special Session: Making Python attractive to
> General Scientists (Harrington, Greenfield)" notes in
>    http://www.scipy.org/wikis/scipy04/ConferenceSchedule
> and I was a bit surprised on one of the conclusions that maybe ATLAS
> optimization should be undone due to difficulties in building ATLAS.
> Though, IMHO, building recent versions of ATLAS libraries is not
> difficult
> at all on Linux platforms and not even on MS Windows (there are
> step-by-step instructions available on Scipy site), it just may be a very
> time consuming process ;).
> It's not even an issue for Mac as Scipy uses its vecLib framework.
> I can't say much on the situation on other unix platforms such as irix,
> sun, etc due to the lack of access to such platforms. But most of current
> and potential Scipy users are either on MS Windows, Linux, or Mac anyway..
> But that was not the point I was surprised on. It was acctually the fact
> that people seem to be unaware of the possibility to build Scipy without
> ATLAS dependency by using Fortran sources of BLAS and LAPACK libraries.
> Let me stress that nothing in Scipy requires specifically ATLAS
> libraries,
> the corresponding interface in scipy.linalg is smart enough to pick up
> ATLAS optimized routines when available and use Fortran BLAS/LAPACK
> routines when they are not.
> My point is that there is (almost) nothing to do to "undo ATLAS
> optimization" in Scipy. ATLAS is optional already. However, when ATLAS is
> not available then Scipy needs BLAS/LAPACK libraries that currently must
> be provided by the system or users must download them from
> Netlib. I think
> that BLAS/LAPACK libraries are the only external libraries that Scipy
> currently depends on.
> To get rid of this dependency, I'd suggest include the sources of
> BLAS/LAPACK libraries to Scipy, and use them silently when optimized
> BLAS/LAPACK libraries are not available. This would be very similar to
> scipy.fftpack that silently uses Fortran fftpack sources when FFTW
> libraries are not found.
> Just wanted to clear some things up..
> Pearu
As one of the notetakers I'll admit I don't have much personal
experience with the issue so I could have gotten the conversation
wrong. But I think the gist was that some felt that there should be
easy-to-install binary packaging for all popular platforms, not
easy-to-build packaging (though of course one hopes that is also
available). If having an optimized ATLAS got in the way of that
goal, then it was argued that it would be better to have a slow version
of the linear algebra libraries in the easy-to-install binaries.
Those that needed the optimized versions could build it themselves.
The stress was on making it very painless for people to install
the general setup on their machines and that meant binary installers.
If the conclusion that optimized atlas made that harder (either
on the people doing the binary packaging--thus it never happens--
or the people doing the installing) is wrong, then I should correct
the notes. But I think that was the point of the comments.


More information about the Scipy-dev mailing list